Variant report

Variant	rs11012489
Chromosome Location	chr10:21307586-21307587
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:21307229..21308983-chr10:21315087..21317954,2	K562	blood:

Variant related genes	Relation type
ENSG00000228753	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10764300	0.97[ASN][1000 genomes]
rs10764301	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10828173	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10828174	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10828175	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10828176	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11012479	1.00[CHB][hapmap];0.96[JPT][hapmap];0.93[ASN][1000 genomes]
rs11012483	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11012485	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11012486	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11012491	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11012492	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11816130	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11817951	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12220884	0.95[ASN][1000 genomes]
rs16921415	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3858200	0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs45503098	0.91[EUR][1000 genomes]
rs55647529	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55687305	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56070435	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58448284	0.93[ASN][1000 genomes]
rs6482158	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs661924	0.86[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs7073838	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7079324	1.00[CEU][hapmap];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7079790	1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72790553	0.87[EUR][1000 genomes]
rs72790563	0.89[EUR][1000 genomes]
rs7896773	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7904906	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7920067	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21290200-21309200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:21290400-21319800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:21290600-21311200	Weak transcription	Brain Substantia Nigra	brain
4	chr10:21292400-21309200	Weak transcription	Brain Cingulate Gyrus	brain
5	chr10:21292600-21308000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr10:21299000-21311000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr10:21300800-21310600	Weak transcription	Right Atrium	heart
8	chr10:21302800-21311200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr10:21305200-21315600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr10:21305200-21319800	Weak transcription	Brain Hippocampus Middle	brain
11	chr10:21305400-21311400	Weak transcription	Fetal Lung	lung
12	chr10:21305800-21310400	Weak transcription	Brain Anterior Caudate	brain
13	chr10:21306400-21311200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr10:21306400-21311800	Weak transcription	Primary neutrophils fromperipheralblood	blood

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