Variant report

Variant	rs4549388
Chromosome Location	chr4:97425481-97425482
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs13127602	0.84[EUR][1000 genomes]
rs13136751	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1506302	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1516668	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17025342	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17025392	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17025422	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1911075	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1914230	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1914231	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2028711	0.85[EUR][1000 genomes]
rs2120492	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2865738	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34167763	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34322283	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34929469	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35019362	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35666606	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66790817	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67248356	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs68169129	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6856653	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7654559	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7667610	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7667933	0.84[EUR][1000 genomes]
rs938549	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879634	chr4:97371381-97727113	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv879635	chr4:97389090-97591085	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1007650	chr4:97393803-97485770	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:97424600-97425800	Weak transcription	Gastric	stomach
2	chr4:97425200-97425600	Weak transcription	Dnd41	blood
3	chr4:97425400-97425800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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