Variant report

Variant	rs1516668
Chromosome Location	chr4:97407233-97407234
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11943536	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11943561	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11943616	0.84[EUR][1000 genomes]
rs13102143	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13120612	0.89[ASN][1000 genomes]
rs13127602	0.84[EUR][1000 genomes]
rs13136751	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1506302	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17025342	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17025392	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17025422	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1911075	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1914230	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1914231	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2028711	0.84[EUR][1000 genomes]
rs2120492	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2865738	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34167763	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34322283	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34929469	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35019362	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35666606	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4549388	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66790817	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67248356	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs68169129	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6856653	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71603290	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7654559	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7667610	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7667933	0.83[EUR][1000 genomes]
rs938549	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879634	chr4:97371381-97727113	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv879635	chr4:97389090-97591085	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1007650	chr4:97393803-97485770	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:97406600-97407400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr4:97407200-97407400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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