Variant report

Variant	rs11943616
Chromosome Location	chr4:97180114-97180115
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1031132	0.91[EUR][1000 genomes]
rs11943079	1.00[JPT][hapmap]
rs11943536	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11943561	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13102143	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13120612	0.81[AMR][1000 genomes]
rs13127602	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13136751	0.89[EUR][1000 genomes]
rs1506302	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1516668	0.84[EUR][1000 genomes]
rs17025342	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17025392	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17025422	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1911075	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1914230	0.87[EUR][1000 genomes]
rs1914231	0.87[EUR][1000 genomes]
rs2028711	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2120492	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2120493	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2865738	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34167763	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34270338	0.94[EUR][1000 genomes]
rs34322283	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35019362	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs66790817	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67248356	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs68169129	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6856653	0.84[EUR][1000 genomes]
rs71603290	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72684745	0.87[EUR][1000 genomes]
rs7654559	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7661756	0.90[EUR][1000 genomes]
rs7667610	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7667933	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830013	chr4:97033125-97204291	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1003868	chr4:97068155-97222544	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv470057	chr4:97104880-97311657	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv461589	chr4:97104881-97311657	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv594916	chr4:97104881-97311657	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv879631	chr4:97114706-97263153	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv879632	chr4:97118539-97308914	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv879633	chr4:97125086-97263153	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv2763381	chr4:97140746-97193871	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:97172200-97183200	Weak transcription	Gastric	stomach
2	chr4:97176600-97181200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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