Variant report

Variant	rs45501996
Chromosome Location	chr18:45566276-45566277
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:45563962..45566776-chr18:45685192..45687168,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs61634759	0.81[EUR][1000 genomes]
rs7244057	0.83[ASN][1000 genomes]
rs72918138	0.86[EUR][1000 genomes]
rs72918141	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72918150	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72918154	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8089034	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45554200-45567800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr18:45554400-45567600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr18:45557400-45570000	Weak transcription	Fetal Intestine Small	intestine
4	chr18:45558400-45578400	Weak transcription	Ovary	ovary
5	chr18:45560200-45566400	Genic enhancers	Esophagus	oesophagus
6	chr18:45562600-45566800	Weak transcription	Aorta	Aorta
7	chr18:45564200-45566800	Weak transcription	Dnd41	blood
8	chr18:45564200-45568000	Strong transcription	Rectal Mucosa Donor 31	rectum
9	chr18:45564400-45567400	Strong transcription	Gastric	stomach
10	chr18:45564400-45568800	Weak transcription	Right Atrium	heart
11	chr18:45564400-45576000	Weak transcription	Stomach Mucosa	stomach
12	chr18:45564600-45566800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr18:45564600-45567000	Weak transcription	Pancreas	Pancrea
14	chr18:45564600-45569200	Weak transcription	Fetal Muscle Trunk	muscle
15	chr18:45564800-45567200	Strong transcription	Fetal Stomach	stomach
16	chr18:45564800-45572000	Weak transcription	Placenta	Placenta
17	chr18:45565200-45567200	Strong transcription	Colonic Mucosa	Colon
18	chr18:45565200-45567200	Weak transcription	Lung	lung
19	chr18:45565200-45567400	Strong transcription	Rectal Mucosa Donor 29	rectum
20	chr18:45565400-45566800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr18:45565800-45566600	Strong transcription	Hela-S3	cervix
22	chr18:45565800-45567200	Strong transcription	Fetal Muscle Leg	muscle
23	chr18:45565800-45567400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr18:45565800-45567600	Strong transcription	Sigmoid Colon	Sigmoid Colon
25	chr18:45566000-45566400	Genic enhancers	Spleen	Spleen

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