Variant report

Variant	rs72918154
Chromosome Location	chr18:45563418-45563419
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:45458331..45460939-chr18:45561622..45564314,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs45501996	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72918138	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72918141	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72918150	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45550600-45564000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr18:45552600-45565200	Weak transcription	Colonic Mucosa	Colon
3	chr18:45554200-45567800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr18:45554400-45567600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr18:45555000-45563800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr18:45555000-45564000	Weak transcription	Adipose Nuclei	Adipose
7	chr18:45557400-45570000	Weak transcription	Fetal Intestine Small	intestine
8	chr18:45558200-45563800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr18:45558400-45578400	Weak transcription	Ovary	ovary
10	chr18:45559000-45565600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr18:45559200-45564400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr18:45559800-45565200	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr18:45560200-45563800	Enhancers	Spleen	Spleen
14	chr18:45560200-45564800	Enhancers	Fetal Muscle Leg	muscle
15	chr18:45560200-45566400	Genic enhancers	Esophagus	oesophagus
16	chr18:45560400-45564600	Enhancers	Fetal Muscle Trunk	muscle
17	chr18:45561600-45563800	Strong transcription	Sigmoid Colon	Sigmoid Colon
18	chr18:45562400-45564400	Enhancers	HSMMtube	muscle
19	chr18:45562400-45565200	Enhancers	Lung	lung
20	chr18:45562600-45564200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr18:45562600-45564400	Enhancers	HMEC	breast
22	chr18:45562600-45564800	Enhancers	Placenta	Placenta
23	chr18:45562600-45566800	Weak transcription	Aorta	Aorta
24	chr18:45562800-45563600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr18:45562800-45564400	Weak transcription	Gastric	stomach
26	chr18:45562800-45565000	Enhancers	Fetal Kidney	kidney
27	chr18:45562800-45565200	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr18:45563000-45563800	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
29	chr18:45563000-45563800	Enhancers	HSMM	muscle
30	chr18:45563000-45564000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr18:45563000-45564200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr18:45563200-45563600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr18:45563200-45564000	Genic enhancers	Fetal Stomach	stomach
34	chr18:45563200-45564600	Enhancers	Pancreas	Pancrea
35	chr18:45563400-45563800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr18:45563400-45564200	Enhancers	Hela-S3	cervix
37	chr18:45563400-45564400	Enhancers	Stomach Mucosa	stomach
38	chr18:45563400-45564600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr18:45563400-45564800	Enhancers	Stomach Smooth Muscle	stomach

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