Variant report

Variant	rs4550392
Chromosome Location	chr15:50291750-50291751
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11070741	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2413997	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2414002	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2414004	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2414005	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2414006	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2414008	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4343223	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4583186	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4627270	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57498160	0.81[AMR][1000 genomes]
rs6493393	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6493394	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7165307	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7176999	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7179614	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8041014	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9302151	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1035983	chr15:50223334-50595170	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv542382	chr15:50223334-50595170	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv904207	chr15:50290295-50352945	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50278000-50301600	Weak transcription	Liver	Liver
2	chr15:50282000-50295600	Weak transcription	Adipose Nuclei	Adipose
3	chr15:50287400-50294400	Weak transcription	Fetal Stomach	stomach
4	chr15:50287600-50296000	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr15:50288400-50294000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr15:50288600-50293600	Weak transcription	Colon Smooth Muscle	Colon
7	chr15:50289600-50291800	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr15:50290000-50291800	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr15:50290200-50291800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr15:50290400-50291800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr15:50290400-50291800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr15:50290400-50292000	Weak transcription	Primary hematopoietic stem cells	blood
13	chr15:50291600-50294600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr15:50291600-50294600	Strong transcription	Monocytes-CD14+_RO01746	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links