Variant report

Variant	rs57498160
Chromosome Location	chr15:50275195-50275196
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10519251	0.82[ASN][1000 genomes]
rs11070741	0.84[AMR][1000 genomes]
rs2413997	0.85[AMR][1000 genomes]
rs2414002	0.83[AMR][1000 genomes]
rs2414004	0.83[AMR][1000 genomes]
rs2414006	0.83[AMR][1000 genomes]
rs4343223	0.82[AMR][1000 genomes]
rs4550392	0.81[AMR][1000 genomes]
rs4583186	0.81[AMR][1000 genomes]
rs4627270	0.85[AMR][1000 genomes]
rs6493393	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7165307	0.85[AMR][1000 genomes]
rs7176999	0.85[AMR][1000 genomes]
rs7179614	0.82[AMR][1000 genomes]
rs8041014	0.85[AMR][1000 genomes]
rs9302151	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1035983	chr15:50223334-50595170	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv542382	chr15:50223334-50595170	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv904205	chr15:50228476-50286981	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50262800-50278200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr15:50265800-50277800	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr15:50267600-50277800	Weak transcription	Spleen	Spleen
4	chr15:50268600-50276800	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr15:50268600-50277600	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr15:50268600-50281000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr15:50268600-50290400	Strong transcription	Primary hematopoietic stem cells	blood
8	chr15:50273200-50280000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr15:50274400-50277800	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr15:50274600-50275400	Enhancers	NHLF	lung
11	chr15:50274600-50275600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr15:50274800-50279400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr15:50275000-50281000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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