Variant report

Variant	rs45505701
Chromosome Location	chr11:66616264-66616265
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:66384888..66387005-chr11:66616259..66619133,2	MCF-7	breast:
2	chr11:66509825..66512726-chr11:66614692..66617335,2	K562	blood:

Variant related genes	Relation type
ENSG00000173715	Chromatin interaction
ENSG00000239306	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs61731811	1.00[AFR][1000 genomes]
rs7930695	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897789	chr11:66372390-66634397	Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
2	nsv897790	chr11:66414915-66626234	Transcr. at gene 5' and 3' Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
3	nsv468602	chr11:66468469-66634397	Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
4	nsv555225	chr11:66468469-66634397	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
5	nsv508638	chr11:66541653-66643634	Strong transcription Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
6	nsv897794	chr11:66579572-66744119	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
7	nsv555226	chr11:66579572-66845362	Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
8	nsv897795	chr11:66608521-66637926	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66612000-66623000	Weak transcription	Psoas Muscle	Psoas
2	chr11:66612000-66623200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:66612000-66623200	Weak transcription	Right Atrium	heart
4	chr11:66612200-66616600	Strong transcription	HUES48 Cell Line	embryonic stem cell
5	chr11:66612200-66616800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:66612200-66617200	Strong transcription	NHEK	skin
7	chr11:66612200-66617800	Strong transcription	Ovary	ovary
8	chr11:66612200-66623000	Weak transcription	Fetal Kidney	kidney
9	chr11:66612200-66623000	Weak transcription	Stomach Mucosa	stomach
10	chr11:66612200-66623000	Weak transcription	HSMM	muscle
11	chr11:66612200-66623200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:66612200-66623200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr11:66612400-66616600	Strong transcription	Rectal Mucosa Donor 29	rectum
14	chr11:66612400-66616800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:66612400-66617000	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr11:66612400-66617200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr11:66612400-66617400	Strong transcription	Thymus	Thymus
18	chr11:66612400-66617800	Strong transcription	Sigmoid Colon	Sigmoid Colon
19	chr11:66612400-66618000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr11:66612400-66618000	Strong transcription	Right Ventricle	heart
21	chr11:66612400-66618400	Strong transcription	HepG2	liver
22	chr11:66612400-66623200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr11:66612400-66623200	Weak transcription	NH-A	brain
24	chr11:66612600-66616400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr11:66612600-66616400	Strong transcription	Aorta	Aorta
26	chr11:66612600-66616400	Strong transcription	Duodenum Smooth Muscle	Duodenum
27	chr11:66612600-66616600	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr11:66612600-66616600	Strong transcription	Duodenum Mucosa	Duodenum
29	chr11:66612600-66616600	Strong transcription	Spleen	Spleen
30	chr11:66612600-66616800	Strong transcription	Lung	lung
31	chr11:66612600-66617000	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr11:66612600-66617000	Strong transcription	Adipose Nuclei	Adipose
33	chr11:66612600-66617000	Strong transcription	Fetal Thymus	thymus
34	chr11:66612600-66617200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr11:66612600-66617400	Strong transcription	iPS-15b Cell Line	embryonic stem cell
36	chr11:66612600-66617800	Strong transcription	Fetal Intestine Large	intestine
37	chr11:66612600-66617800	Strong transcription	Placenta	Placenta
38	chr11:66612600-66618200	Strong transcription	Cortex derived primary cultured neurospheres	brain
39	chr11:66612600-66618400	Strong transcription	HUES6 Cell Line	embryonic stem cell
40	chr11:66612600-66618400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr11:66612600-66619400	Strong transcription	Fetal Muscle Leg	muscle
42	chr11:66612600-66619800	Strong transcription	Brain Substantia Nigra	brain
43	chr11:66612600-66620000	Strong transcription	Skeletal Muscle Male	skeletal muscle
44	chr11:66612600-66620200	Strong transcription	Fetal Intestine Small	intestine
45	chr11:66612600-66620400	Strong transcription	Brain Anterior Caudate	brain
46	chr11:66612600-66620800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr11:66612800-66616600	Strong transcription	Primary T helper cells PMA-I stimulated	--
48	chr11:66612800-66616600	Strong transcription	Rectal Mucosa Donor 31	rectum
49	chr11:66612800-66616800	Strong transcription	Pancreas	Pancrea
50	chr11:66612800-66617000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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