Variant report

Variant	rs61731811
Chromosome Location	chr11:66366958-66366959
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:66366106..66376502-chr11:66378243..66386807,17	K562	blood:
2	chr11:66365616..66367263-chr11:66370515..66372888,2	K562	blood:
3	chr11:66366218..66370656-chr11:66381863..66384866,5	MCF-7	breast:
4	chr11:66358617..66363403-chr11:66366526..66370072,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182791	Chromatin interaction
ENSG00000248643	Chromatin interaction
ENSG00000173992	Chromatin interaction
ENSG00000199325	Chromatin interaction
ENSG00000239306	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs45505701	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522277	chr11:66234023-66493825	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66361400-66367000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr11:66361400-66369600	Weak transcription	HMEC	breast
3	chr11:66361400-66369800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:66361400-66371800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr11:66361400-66382800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:66361400-66383400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:66361600-66367000	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr11:66361600-66367000	Weak transcription	A549	lung
9	chr11:66361600-66367200	Weak transcription	NHEK	skin
10	chr11:66361600-66367600	Weak transcription	NHDF-Ad	bronchial
11	chr11:66361600-66369600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:66361600-66372800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr11:66361600-66374400	Weak transcription	Psoas Muscle	Psoas
14	chr11:66361600-66377000	Weak transcription	HUVEC	blood vessel
15	chr11:66362200-66377200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr11:66362400-66368000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr11:66363000-66372400	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr11:66363000-66377200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr11:66363200-66370000	Weak transcription	HSMM	muscle
20	chr11:66363200-66383200	Weak transcription	Fetal Kidney	kidney
21	chr11:66363400-66367000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr11:66363400-66367000	Weak transcription	Small Intestine	intestine
23	chr11:66363400-66368000	Weak transcription	NH-A	brain
24	chr11:66363400-66368200	Weak transcription	Right Atrium	heart
25	chr11:66363400-66382800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr11:66363400-66383200	Weak transcription	Fetal Brain Male	brain
27	chr11:66363600-66367400	Weak transcription	GM12878-XiMat	blood
28	chr11:66363600-66367800	Weak transcription	Primary hematopoietic stem cells	blood
29	chr11:66363600-66368800	Weak transcription	Fetal Heart	heart
30	chr11:66363600-66371600	Weak transcription	K562	blood
31	chr11:66363600-66374600	Weak transcription	Stomach Mucosa	stomach
32	chr11:66363600-66377200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr11:66363800-66377400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr11:66364600-66367000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr11:66364800-66369000	Strong transcription	Fetal Stomach	stomach
36	chr11:66366000-66374200	Strong transcription	HUES6 Cell Line	embryonic stem cell
37	chr11:66366200-66367800	Strong transcription	HUES48 Cell Line	embryonic stem cell
38	chr11:66366200-66368400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr11:66366200-66368600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr11:66366200-66368600	Strong transcription	Primary T cells fromperipheralblood	blood
41	chr11:66366200-66369400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr11:66366200-66370000	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
43	chr11:66366200-66370800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr11:66366400-66367200	Genic enhancers	Spleen	Spleen
45	chr11:66366400-66367400	Strong transcription	Primary B cells from cord blood	blood
46	chr11:66366400-66367400	Strong transcription	Hela-S3	cervix
47	chr11:66366400-66367400	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr11:66366400-66367600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr11:66366400-66367600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
50	chr11:66366400-66367600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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