Variant report

Variant	rs45520135
Chromosome Location	chr11:45677231-45677232
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:45671225..45673031-chr11:45675062..45677985,2	K562	blood:
2	chr11:45427814..45428397-chr11:45676543..45677286,2	MCF-7	breast:
3	chr11:45676348..45677919-chr11:45792905..45794177,5	K562	blood:
4	chr11:45677224..45679884-chr11:45774991..45777658,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000205106	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs41441045	1.00[AFR][1000 genomes]
rs45493791	1.00[AFR][1000 genomes]
rs45535741	0.84[AFR][1000 genomes]
rs45593638	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897311	chr11:45663568-45691118	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv897312	chr11:45663568-45699134	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv897313	chr11:45670395-45699134	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv554197	chr11:45673014-45679212	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv554198	chr11:45674266-45684117	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45665600-45680000	Weak transcription	Gastric	stomach
2	chr11:45670000-45680200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:45673800-45677400	Enhancers	Fetal Muscle Leg	muscle
4	chr11:45674200-45679800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:45674600-45679800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:45675600-45677800	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr11:45675600-45679800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr11:45675800-45677400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr11:45675800-45677400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr11:45675800-45677400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
11	chr11:45676000-45677600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:45676000-45677800	Enhancers	Brain Germinal Matrix	brain
13	chr11:45676200-45677400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr11:45676200-45677800	Enhancers	Fetal Brain Male	brain
15	chr11:45676400-45677400	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr11:45676400-45677400	Enhancers	H1 Cell Line	embryonic stem cell
17	chr11:45676400-45677400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr11:45676400-45677400	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr11:45676400-45677400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr11:45676400-45677400	Enhancers	Brain Substantia Nigra	brain
21	chr11:45676400-45677400	Enhancers	Right Ventricle	heart
22	chr11:45676400-45677400	Enhancers	Spleen	Spleen
23	chr11:45676400-45677800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
24	chr11:45676400-45677800	Enhancers	HUVEC	blood vessel
25	chr11:45676600-45677400	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr11:45676600-45677400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
27	chr11:45676600-45677400	Enhancers	Left Ventricle	heart
28	chr11:45676600-45677400	Enhancers	Dnd41	blood
29	chr11:45676800-45677400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
30	chr11:45676800-45677400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
31	chr11:45676800-45677400	Bivalent Enhancer	Stomach Smooth Muscle	stomach
32	chr11:45676800-45677800	Weak transcription	Psoas Muscle	Psoas
33	chr11:45676800-45680000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr11:45677000-45677400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr11:45677000-45677400	Enhancers	Brain Cingulate Gyrus	brain
36	chr11:45677000-45677400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
37	chr11:45677000-45677400	Flanking Active TSS	Fetal Brain Female	brain
38	chr11:45677000-45677400	Bivalent Enhancer	Placenta	Placenta
39	chr11:45677000-45677400	Enhancers	Lung	lung
40	chr11:45677000-45677400	Enhancers	Ovary	ovary
41	chr11:45677000-45677400	Enhancers	Sigmoid Colon	Sigmoid Colon
42	chr11:45677000-45677600	Enhancers	Brain Inferior Temporal Lobe	brain
43	chr11:45677000-45677600	Bivalent Enhancer	Fetal Stomach	stomach
44	chr11:45677000-45679800	Weak transcription	Osteobl	bone
45	chr11:45677000-45680000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr11:45677200-45677400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
47	chr11:45677200-45677400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
48	chr11:45677200-45677800	Enhancers	Brain Angular Gyrus	brain
49	chr11:45677200-45677800	Enhancers	Brain Hippocampus Middle	brain
50	chr11:45677200-45678400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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