Variant report

Variant	rs45533136
Chromosome Location	chr11:45673493-45673494
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C11orf94-5	chr11:45672783-45673640	NONHSAT019041

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1038655	1.00[AMR][1000 genomes]
rs1387057	1.00[AMR][1000 genomes]
rs1447568	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs45530833	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs45564632	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897311	chr11:45663568-45691118	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv897312	chr11:45663568-45699134	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv897313	chr11:45670395-45699134	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv554197	chr11:45673014-45679212	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45665600-45674400	Weak transcription	HMEC	breast
2	chr11:45665600-45680000	Weak transcription	Gastric	stomach
3	chr11:45669200-45674000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr11:45669800-45676400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr11:45669800-45676400	Weak transcription	HUVEC	blood vessel
6	chr11:45669800-45676600	Weak transcription	Left Ventricle	heart
7	chr11:45670000-45680200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:45670200-45673800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:45670600-45673800	Strong transcription	Fetal Brain Female	brain
10	chr11:45670600-45675400	Strong transcription	Dnd41	blood
11	chr11:45670600-45676600	Weak transcription	Brain Hippocampus Middle	brain
12	chr11:45671200-45676200	Weak transcription	Fetal Brain Male	brain
13	chr11:45671800-45673600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:45671800-45674200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr11:45672000-45673600	Strong transcription	Brain Germinal Matrix	brain
16	chr11:45672000-45673800	Weak transcription	Fetal Muscle Leg	muscle
17	chr11:45672600-45675200	Weak transcription	Aorta	Aorta
18	chr11:45672600-45675800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr11:45672600-45676400	Weak transcription	Right Ventricle	heart
20	chr11:45672800-45674200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr11:45673000-45673600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr11:45673000-45673600	Strong transcription	Spleen	Spleen
23	chr11:45673200-45674200	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr11:45673200-45675400	Weak transcription	Brain Cingulate Gyrus	brain
25	chr11:45673200-45677000	Weak transcription	Ovary	ovary
26	chr11:45673400-45673600	Weak transcription	Brain Angular Gyrus	brain
27	chr11:45673400-45674200	Bivalent Enhancer	Fetal Stomach	stomach
28	chr11:45673400-45674400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr11:45673400-45674600	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr11:45673400-45675800	Weak transcription	Brain Anterior Caudate	brain
31	chr11:45673400-45677000	Weak transcription	Lung	lung

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