Variant report

Variant	rs4554530
Chromosome Location	chr9:103397968-103397969
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10217205	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10283519	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10283522	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10760729	0.85[ASN][1000 genomes]
rs10989177	0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10989206	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10989209	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10989210	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1936640	0.87[ASN][1000 genomes]
rs36196957	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4518720	0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs4581110	0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs4742787	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4742790	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4743405	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4743411	0.90[AMR][1000 genomes]
rs4743412	0.88[AMR][1000 genomes]
rs62577640	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7863904	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv893624	chr9:103351931-103416553	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv973433	chr9:103391464-103401515	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103394200-103400000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:103395200-103400400	Weak transcription	Ovary	ovary
3	chr9:103396600-103400200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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