Variant report

Variant	rs10989209
Chromosome Location	chr9:103435244-103435245
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10217205	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10283519	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10283522	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989206	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10989210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36196957	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4454339	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4554530	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4742787	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4742790	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4743405	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4743411	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4743412	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62577640	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7851200	0.80[EUR][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103432200-103435400	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr9:103432200-103438600	Enhancers	Fetal Brain Male	brain
3	chr9:103432600-103439200	Enhancers	Fetal Brain Female	brain
4	chr9:103433200-103438600	Enhancers	Fetal Muscle Leg	muscle
5	chr9:103433400-103436400	Weak transcription	HSMMtube	muscle
6	chr9:103434600-103435400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr9:103434600-103435400	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr9:103434800-103437200	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr9:103435000-103436200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:103435000-103438200	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr9:103435200-103436200	Weak transcription	Brain Germinal Matrix	brain
12	chr9:103435200-103438000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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