Variant report

Variant	rs455509
Chromosome Location	chr20:15626639-15626640
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12479845	0.80[ASN][1000 genomes]
rs12480166	0.84[JPT][hapmap]
rs2021915	0.86[CHD][hapmap]
rs6105447	0.83[TSI][hapmap]
rs6105448	0.81[ASN][1000 genomes]
rs6110707	0.85[CEU][hapmap]
rs6110710	0.84[JPT][hapmap]
rs6110712	0.93[CHD][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs6110714	0.84[CHD][hapmap];0.84[JPT][hapmap]
rs6110715	0.84[JPT][hapmap]
rs6110716	0.84[JPT][hapmap]
rs6110718	0.84[JPT][hapmap]
rs6131683	0.90[JPT][hapmap]
rs6131684	0.90[JPT][hapmap]
rs6135475	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2751909	chr20:15489871-15656007	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv833928	chr20:15619962-15780758	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15617600-15629000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr20:15619400-15629200	Weak transcription	Colon Smooth Muscle	Colon
3	chr20:15619400-15634600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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