Variant report

Variant	rs6110712
Chromosome Location	chr20:15644537-15644538
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10485533	1.00[CEU][hapmap]
rs10485534	0.82[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs10485537	1.00[CEU][hapmap]
rs12479845	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12480105	1.00[CEU][hapmap]
rs12480166	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12480191	1.00[CEU][hapmap]
rs12480578	1.00[CEU][hapmap]
rs12480842	1.00[CEU][hapmap]
rs1544629	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16996211	1.00[CEU][hapmap]
rs2021915	0.90[CHB][hapmap];0.83[CHD][hapmap];0.80[MEX][hapmap];0.85[ASN][1000 genomes]
rs455509	0.93[CHD][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs6105448	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6110706	1.00[CEU][hapmap]
rs6110710	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6110714	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];0.96[GIH][hapmap];0.90[JPT][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6110715	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6110716	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6110717	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6110718	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6110719	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs6110720	1.00[YRI][hapmap]
rs6131683	0.85[JPT][hapmap]
rs6131684	0.85[JPT][hapmap]
rs6135472	1.00[CEU][hapmap]
rs6135475	0.86[CHD][hapmap];0.95[JPT][hapmap]
rs6514589	1.00[CEU][hapmap]
rs6514590	1.00[CEU][hapmap]
rs6514591	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs7272064	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2751909	chr20:15489871-15656007	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv833928	chr20:15619962-15780758	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15642200-15645200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr20:15643600-15644800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr20:15643600-15644800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr20:15644200-15645200	Weak transcription	Ovary	ovary
5	chr20:15644400-15644800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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