Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10485533	1.00[CEU][hapmap]
rs10485537	1.00[CEU][hapmap]
rs12480105	1.00[CEU][hapmap]
rs12480166	1.00[CEU][hapmap]
rs12480191	1.00[CEU][hapmap]
rs12480578	1.00[CEU][hapmap]
rs12480842	1.00[CEU][hapmap]
rs1544629	1.00[CEU][hapmap]
rs16996211	1.00[CEU][hapmap]
rs55887936	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6034241	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6034242	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6105447	0.82[JPT][hapmap]
rs6110701	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6110707	0.80[CHB][hapmap];0.84[JPT][hapmap]
rs6110710	1.00[CEU][hapmap]
rs6110712	1.00[CEU][hapmap]
rs6110714	1.00[CEU][hapmap]
rs6110715	1.00[CEU][hapmap]
rs6110716	1.00[CEU][hapmap]
rs6110718	1.00[CEU][hapmap]
rs6135472	1.00[CEU][hapmap]
rs62196466	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6514589	1.00[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6514590	1.00[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6514591	1.00[CEU][hapmap];0.85[AMR][1000 genomes]
rs7272064	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2751909	chr20:15489871-15656007	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv833928	chr20:15619962-15780758	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15619400-15634600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr20:15630400-15636400	Weak transcription	NHDF-Ad	bronchial
3	chr20:15631000-15636200	Weak transcription	Colon Smooth Muscle	Colon
4	chr20:15631600-15634400	Weak transcription	GM12878-XiMat	blood

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