Variant report

Variant	rs12480191
Chromosome Location	chr20:15645274-15645275
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10485532	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10485533	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10485537	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap]
rs115021	1.00[AFR][1000 genomes]
rs12480105	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12480166	1.00[CEU][hapmap]
rs12480578	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12480842	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1544629	1.00[CEU][hapmap]
rs16996211	1.00[CEU][hapmap]
rs16996280	0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs16996281	0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs16996282	0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs16996284	0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs16996288	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs16996289	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs375604	1.00[AFR][1000 genomes]
rs421304	1.00[AFR][1000 genomes]
rs457392	0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs457433	1.00[AFR][1000 genomes]
rs457476	1.00[AFR][1000 genomes]
rs457829	1.00[AFR][1000 genomes]
rs457904	1.00[AFR][1000 genomes]
rs458093	1.00[AFR][1000 genomes]
rs458524	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs459056	1.00[AFR][1000 genomes]
rs459506	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs460829	1.00[AFR][1000 genomes]
rs460848	1.00[AFR][1000 genomes]
rs461032	0.83[CHB][hapmap];0.93[JPT][hapmap];1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs461306	1.00[AFR][1000 genomes]
rs461363	1.00[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs461414	1.00[AFR][1000 genomes]
rs461619	1.00[AFR][1000 genomes]
rs462116	1.00[AFR][1000 genomes]
rs463057	0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs463172	1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs463243	1.00[AFR][1000 genomes]
rs464004	1.00[AFR][1000 genomes]
rs464279	1.00[AFR][1000 genomes]
rs465172	0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs466379	1.00[AFR][1000 genomes]
rs466871	1.00[AFR][1000 genomes]
rs6034247	0.89[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6110706	1.00[CEU][hapmap]
rs6110710	1.00[CEU][hapmap]
rs6110712	1.00[CEU][hapmap]
rs6110714	1.00[CEU][hapmap]
rs6110715	1.00[CEU][hapmap]
rs6110716	1.00[CEU][hapmap]
rs6110718	1.00[CEU][hapmap]
rs6135472	1.00[CEU][hapmap]
rs6514589	1.00[CEU][hapmap]
rs6514590	1.00[CEU][hapmap]
rs6514591	1.00[CEU][hapmap]
rs7272064	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2751909	chr20:15489871-15656007	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv833928	chr20:15619962-15780758	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15645200-15645800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links