Variant report

Variant	rs12480578
Chromosome Location	chr20:15646848-15646849
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10485532	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10485533	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs10485537	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[CHD][hapmap];0.87[JPT][hapmap]
rs12480105	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12480166	1.00[CEU][hapmap]
rs12480191	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12480842	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1544629	1.00[CEU][hapmap]
rs16996211	1.00[CEU][hapmap]
rs16996280	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs16996281	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs16996282	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs16996284	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs16996288	0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs16996289	0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs457392	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs458524	0.83[ASN][1000 genomes]
rs459506	0.83[ASN][1000 genomes]
rs461032	0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs461363	0.84[ASN][1000 genomes]
rs463057	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs463172	0.81[ASN][1000 genomes]
rs465172	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6034247	0.82[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6110706	1.00[CEU][hapmap]
rs6110710	1.00[CEU][hapmap]
rs6110712	1.00[CEU][hapmap]
rs6110714	1.00[CEU][hapmap]
rs6110715	1.00[CEU][hapmap]
rs6110716	1.00[CEU][hapmap]
rs6110718	1.00[CEU][hapmap]
rs6135472	1.00[CEU][hapmap]
rs6514589	1.00[CEU][hapmap]
rs6514590	1.00[CEU][hapmap]
rs6514591	1.00[CEU][hapmap]
rs7272064	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2751909	chr20:15489871-15656007	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv833928	chr20:15619962-15780758	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15646800-15647200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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