Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10485533	1.00[CEU][hapmap]
rs10485534	0.81[JPT][hapmap]
rs10485537	1.00[CEU][hapmap]
rs12479845	0.80[EUR][1000 genomes]
rs12480105	1.00[CEU][hapmap]
rs12480166	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs12480191	1.00[CEU][hapmap]
rs12480578	1.00[CEU][hapmap]
rs12480842	1.00[CEU][hapmap]
rs1544629	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs16996211	1.00[CEU][hapmap]
rs4814395	0.80[CHB][hapmap];1.00[JPT][hapmap]
rs6034240	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs6105448	0.80[EUR][1000 genomes]
rs6110701	0.88[ASN][1000 genomes]
rs6110706	1.00[CEU][hapmap];0.85[AMR][1000 genomes]
rs6110709	0.92[ASN][1000 genomes]
rs6110710	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs6110712	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs6110714	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs6110715	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs6110716	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs6110717	0.80[EUR][1000 genomes]
rs6110718	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs6110719	0.82[JPT][hapmap]
rs6110720	0.82[JPT][hapmap]
rs6135472	1.00[CEU][hapmap]
rs6514589	1.00[CEU][hapmap]
rs6514590	1.00[CEU][hapmap];0.85[AMR][1000 genomes]
rs7272064	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2751909	chr20:15489871-15656007	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv833928	chr20:15619962-15780758	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15634000-15641200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr20:15634200-15637200	Enhancers	Fetal Heart	heart
3	chr20:15634800-15637400	Enhancers	Osteobl	bone
4	chr20:15635400-15636600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr20:15635400-15639000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr20:15635600-15637400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr20:15635600-15639000	Weak transcription	Brain Hippocampus Middle	brain
8	chr20:15636000-15637400	Enhancers	Rectal Smooth Muscle	rectum
9	chr20:15636200-15637200	Enhancers	Fetal Stomach	stomach
10	chr20:15636200-15637400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr20:15636200-15637400	Enhancers	Fetal Kidney	kidney
12	chr20:15636400-15636800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr20:15636400-15636800	Flanking Active TSS	Colon Smooth Muscle	Colon
14	chr20:15636400-15636800	Enhancers	Fetal Muscle Leg	muscle
15	chr20:15636400-15637200	Enhancers	Placenta Amnion	Placenta Amnion
16	chr20:15636400-15637200	Enhancers	NHDF-Ad	bronchial
17	chr20:15636400-15637400	Enhancers	Muscle Satellite Cultured Cells	--

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