Variant report
| Variant | rs6110720 |
|---|---|
| Chromosome Location | chr20:15647310-15647311 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10485534 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs12479845 | 0.91[AFR][1000 genomes] |
| rs12480166 | 1.00[YRI][hapmap];0.96[AFR][1000 genomes] |
| rs2023385 | 1.00[CHB][hapmap];0.89[JPT][hapmap] |
| rs4814395 | 0.90[CHB][hapmap];0.82[JPT][hapmap] |
| rs55887936 | 0.87[ASN][1000 genomes] |
| rs6034240 | 1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs6034241 | 0.87[ASN][1000 genomes] |
| rs6034242 | 0.87[ASN][1000 genomes] |
| rs6110708 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6110709 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6110710 | 1.00[YRI][hapmap];0.94[AFR][1000 genomes] |
| rs6110712 | 1.00[YRI][hapmap] |
| rs6110714 | 0.90[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs6110715 | 1.00[YRI][hapmap];0.94[AFR][1000 genomes] |
| rs6110716 | 1.00[YRI][hapmap];0.96[AFR][1000 genomes] |
| rs6110717 | 0.96[AFR][1000 genomes] |
| rs6110718 | 1.00[YRI][hapmap];0.96[AFR][1000 genomes] |
| rs6110719 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs62196466 | 0.90[ASN][1000 genomes] |
| rs6514591 | 0.82[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869328 | chr20:15325423-16213898 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | esv2751909 | chr20:15489871-15656007 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv833928 | chr20:15619962-15780758 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
