Variant report
Variant | rs10485534 |
---|---|
Chromosome Location | chr20:15650897-15650898 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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rs_ID | r2[population] |
---|---|
rs12479845 | 0.93[AFR][1000 genomes] |
rs12480166 | 1.00[YRI][hapmap];0.98[AFR][1000 genomes] |
rs1544629 | 0.81[AFR][1000 genomes] |
rs2023385 | 1.00[CHB][hapmap];0.88[JPT][hapmap] |
rs4814395 | 0.90[CHB][hapmap];0.81[JPT][hapmap] |
rs55887936 | 0.85[ASN][1000 genomes] |
rs6034240 | 0.87[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes] |
rs6034241 | 0.85[ASN][1000 genomes] |
rs6034242 | 0.85[ASN][1000 genomes] |
rs6110708 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs6110709 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs6110710 | 1.00[YRI][hapmap];0.96[AFR][1000 genomes] |
rs6110712 | 0.82[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes] |
rs6110714 | 0.82[ASW][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes] |
rs6110715 | 1.00[YRI][hapmap];0.96[AFR][1000 genomes] |
rs6110716 | 1.00[YRI][hapmap];0.98[AFR][1000 genomes] |
rs6110717 | 0.98[AFR][1000 genomes] |
rs6110718 | 1.00[YRI][hapmap];0.98[AFR][1000 genomes] |
rs6110719 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs6110720 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
rs62196466 | 0.87[ASN][1000 genomes] |
rs6514591 | 0.81[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv869328 | chr20:15325423-16213898 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
2 | esv2751909 | chr20:15489871-15656007 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
3 | nsv833928 | chr20:15619962-15780758 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |