Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10485533	1.00[CEU][hapmap]
rs10485537	1.00[CEU][hapmap]
rs12106127	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12106130	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12480105	1.00[CEU][hapmap]
rs12480166	1.00[CEU][hapmap]
rs12480191	1.00[CEU][hapmap]
rs12480578	1.00[CEU][hapmap]
rs12480842	1.00[CEU][hapmap]
rs1544629	1.00[CEU][hapmap]
rs459716	1.00[YRI][hapmap]
rs6110706	1.00[CEU][hapmap]
rs6110710	1.00[CEU][hapmap]
rs6110712	1.00[CEU][hapmap]
rs6110714	1.00[CEU][hapmap]
rs6110715	1.00[CEU][hapmap]
rs6110716	1.00[CEU][hapmap]
rs6110718	1.00[CEU][hapmap]
rs6135472	0.87[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];0.84[JPT][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6514589	1.00[CEU][hapmap]
rs6514590	1.00[CEU][hapmap]
rs6514591	1.00[CEU][hapmap]
rs7272064	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2751909	chr20:15489871-15656007	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15610000-15617400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr20:15616600-15619200	Enhancers	H1 Cell Line	embryonic stem cell
3	chr20:15616800-15617600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr20:15616800-15617800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr20:15616800-15619400	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr20:15616800-15619800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr20:15617000-15617600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr20:15617000-15618400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr20:15617000-15619600	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr20:15617000-15619800	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr20:15617000-15619800	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr20:15617000-15620400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr20:15617200-15617400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr20:15617200-15618600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr20:15617200-15619800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr20:15617200-15619800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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