Variant report
Variant | rs12480842 |
---|---|
Chromosome Location | chr20:15647195-15647196 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10485532 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs10485533 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs10485537 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap] |
rs12480105 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs12480166 | 1.00[CEU][hapmap] |
rs12480191 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs12480578 | 1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs1544629 | 1.00[CEU][hapmap] |
rs16996211 | 1.00[CEU][hapmap] |
rs16996280 | 0.83[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
rs16996281 | 0.83[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
rs16996282 | 0.83[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
rs16996284 | 0.83[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
rs16996288 | 0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
rs16996289 | 0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
rs457392 | 0.83[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes] |
rs458524 | 0.83[ASN][1000 genomes] |
rs459506 | 0.83[ASN][1000 genomes] |
rs461032 | 0.83[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes] |
rs461363 | 0.84[ASN][1000 genomes] |
rs463057 | 0.83[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes] |
rs463172 | 0.81[ASN][1000 genomes] |
rs465172 | 0.83[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
rs6034247 | 0.89[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
rs6110706 | 1.00[CEU][hapmap] |
rs6110710 | 1.00[CEU][hapmap] |
rs6110712 | 1.00[CEU][hapmap] |
rs6110714 | 1.00[CEU][hapmap] |
rs6110715 | 1.00[CEU][hapmap] |
rs6110716 | 1.00[CEU][hapmap] |
rs6110718 | 1.00[CEU][hapmap] |
rs6135472 | 1.00[CEU][hapmap] |
rs6514589 | 1.00[CEU][hapmap] |
rs6514590 | 1.00[CEU][hapmap] |
rs6514591 | 1.00[CEU][hapmap] |
rs7272064 | 1.00[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv869328 | chr20:15325423-16213898 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
2 | esv2751909 | chr20:15489871-15656007 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
3 | nsv833928 | chr20:15619962-15780758 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:15646800-15647200 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |