Variant report

Variant	rs457476
Chromosome Location	chr20:15594863-15594864
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs115021	1.00[AFR][1000 genomes]
rs12480191	1.00[AFR][1000 genomes]
rs16996280	1.00[AFR][1000 genomes]
rs16996281	1.00[AFR][1000 genomes]
rs16996282	1.00[AFR][1000 genomes]
rs16996284	1.00[AFR][1000 genomes]
rs16996288	1.00[AFR][1000 genomes]
rs16996289	1.00[AFR][1000 genomes]
rs34414848	0.92[EUR][1000 genomes]
rs375604	1.00[AFR][1000 genomes]
rs421304	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs457392	1.00[AFR][1000 genomes]
rs457433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs457829	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs457904	1.00[AFR][1000 genomes]
rs458093	1.00[AFR][1000 genomes]
rs458312	0.92[EUR][1000 genomes]
rs458524	1.00[AFR][1000 genomes]
rs458809	0.92[EUR][1000 genomes]
rs459056	1.00[AFR][1000 genomes]
rs459506	1.00[AFR][1000 genomes]
rs459757	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs460131	0.92[EUR][1000 genomes]
rs460770	1.00[EUR][1000 genomes]
rs460829	1.00[AFR][1000 genomes]
rs460848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs460953	0.84[EUR][1000 genomes]
rs461032	1.00[AFR][1000 genomes]
rs461306	1.00[AFR][1000 genomes]
rs461363	1.00[AFR][1000 genomes]
rs461414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs461619	1.00[AFR][1000 genomes]
rs462116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs462908	0.84[EUR][1000 genomes]
rs463057	1.00[AFR][1000 genomes]
rs463172	1.00[AFR][1000 genomes]
rs463243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs464004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs464279	1.00[AFR][1000 genomes]
rs465172	1.00[AFR][1000 genomes]
rs466379	1.00[AFR][1000 genomes]
rs466871	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2751909	chr20:15489871-15656007	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15589000-15596000	Enhancers	Fetal Heart	heart
2	chr20:15591000-15595200	Enhancers	Liver	Liver
3	chr20:15593200-15595200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr20:15593600-15596200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr20:15594600-15606600	Weak transcription	Aorta	Aorta
6	chr20:15594800-15595600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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