Variant report

Variant	rs458809
Chromosome Location	chr20:15590588-15590589
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11905049	1.00[ASN][1000 genomes]
rs11905075	1.00[ASN][1000 genomes]
rs34414848	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs421304	0.92[EUR][1000 genomes]
rs454571	1.00[ASN][1000 genomes]
rs457433	0.92[EUR][1000 genomes]
rs457476	0.92[EUR][1000 genomes]
rs458312	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs460131	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs460770	0.92[EUR][1000 genomes]
rs460848	0.92[EUR][1000 genomes]
rs460953	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs462908	0.92[EUR][1000 genomes]
rs464004	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2751909	chr20:15489871-15656007	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15584800-15593600	Weak transcription	Fetal Intestine Small	intestine
2	chr20:15586200-15591000	Weak transcription	Liver	Liver
3	chr20:15589000-15596000	Enhancers	Fetal Heart	heart
4	chr20:15589600-15591600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr20:15589800-15590800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr20:15589800-15592000	Enhancers	Fetal Lung	lung
7	chr20:15590000-15591600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr20:15590400-15591400	Enhancers	Colon Smooth Muscle	Colon
9	chr20:15590400-15591600	Enhancers	Stomach Smooth Muscle	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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