Variant report

Variant	rs11905049
Chromosome Location	chr20:15583443-15583444
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11905075	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11906165	1.00[CHB][hapmap]
rs11907234	1.00[CEU][hapmap]
rs200769	1.00[CEU][hapmap]
rs200770	1.00[CEU][hapmap]
rs200771	1.00[CEU][hapmap]
rs201214	1.00[CHB][hapmap]
rs34414848	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs454571	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs458312	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs458809	1.00[ASN][1000 genomes]
rs459056	1.00[CEU][hapmap]
rs460131	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];1.00[ASN][1000 genomes]
rs460770	1.00[JPT][hapmap]
rs460953	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs462908	1.00[ASW][hapmap]
rs6043483	1.00[CEU][hapmap]
rs6110787	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2751909	chr20:15489871-15656007	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15578800-15583800	Weak transcription	Placenta	Placenta
2	chr20:15581800-15584200	Weak transcription	Fetal Intestine Small	intestine
3	chr20:15582000-15584000	Weak transcription	Fetal Intestine Large	intestine
4	chr20:15583200-15589000	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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