Variant report

Variant	rs460770
Chromosome Location	chr20:15594620-15594621
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11905049	1.00[JPT][hapmap]
rs11905075	1.00[JPT][hapmap]
rs34414848	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs421304	1.00[EUR][1000 genomes]
rs454571	1.00[JPT][hapmap]
rs457433	1.00[EUR][1000 genomes]
rs457476	1.00[EUR][1000 genomes]
rs457829	0.82[EUR][1000 genomes]
rs458312	1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs458809	0.92[EUR][1000 genomes]
rs459757	0.82[EUR][1000 genomes]
rs460131	1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs460848	1.00[EUR][1000 genomes]
rs460953	0.84[EUR][1000 genomes]
rs461414	0.82[EUR][1000 genomes]
rs462116	0.82[EUR][1000 genomes]
rs462908	0.81[YRI][hapmap];0.84[EUR][1000 genomes]
rs463243	0.82[EUR][1000 genomes]
rs464004	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2751909	chr20:15489871-15656007	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15589000-15596000	Enhancers	Fetal Heart	heart
2	chr20:15591000-15595200	Enhancers	Liver	Liver
3	chr20:15592200-15594800	Enhancers	Fetal Lung	lung
4	chr20:15593200-15595200	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr20:15593600-15594800	Enhancers	Right Atrium	heart
6	chr20:15593600-15594800	Enhancers	Stomach Mucosa	stomach
7	chr20:15593600-15596200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr20:15594000-15594800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr20:15594200-15594800	Bivalent Enhancer	HSMMtube	muscle
10	chr20:15594600-15606600	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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