Variant report
| Variant | rs458093 |
|---|---|
| Chromosome Location | chr20:15588114-15588115 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs115021 | 1.00[AFR][1000 genomes] |
| rs12480191 | 1.00[AFR][1000 genomes] |
| rs16996280 | 1.00[AFR][1000 genomes] |
| rs16996281 | 1.00[AFR][1000 genomes] |
| rs16996282 | 1.00[AFR][1000 genomes] |
| rs16996284 | 1.00[AFR][1000 genomes] |
| rs16996288 | 1.00[AFR][1000 genomes] |
| rs16996289 | 1.00[AFR][1000 genomes] |
| rs375604 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs421304 | 1.00[AFR][1000 genomes] |
| rs457392 | 1.00[AFR][1000 genomes] |
| rs457433 | 1.00[AFR][1000 genomes] |
| rs457476 | 1.00[AFR][1000 genomes] |
| rs457829 | 1.00[AFR][1000 genomes] |
| rs457904 | 1.00[AFR][1000 genomes] |
| rs458524 | 1.00[AFR][1000 genomes] |
| rs459056 | 1.00[AFR][1000 genomes] |
| rs459506 | 1.00[AFR][1000 genomes] |
| rs460829 | 1.00[AFR][1000 genomes] |
| rs460848 | 1.00[AFR][1000 genomes] |
| rs461032 | 1.00[AFR][1000 genomes] |
| rs461306 | 1.00[AFR][1000 genomes] |
| rs461363 | 1.00[AFR][1000 genomes] |
| rs461414 | 1.00[AFR][1000 genomes] |
| rs461619 | 1.00[AFR][1000 genomes] |
| rs462116 | 1.00[AFR][1000 genomes] |
| rs463057 | 1.00[AFR][1000 genomes] |
| rs463172 | 1.00[AFR][1000 genomes] |
| rs463243 | 1.00[AFR][1000 genomes] |
| rs464004 | 1.00[AFR][1000 genomes] |
| rs464279 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs465172 | 1.00[AFR][1000 genomes] |
| rs466379 | 1.00[AFR][1000 genomes] |
| rs466871 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869328 | chr20:15325423-16213898 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | esv2751909 | chr20:15489871-15656007 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr20:15583200-15589000 | Weak transcription | Fetal Heart | heart |
| 2 | chr20:15584800-15593600 | Weak transcription | Fetal Intestine Small | intestine |
| 3 | chr20:15586200-15591000 | Weak transcription | Liver | Liver |
