Variant report

Variant	rs45571640
Chromosome Location	chr6:74422585-74422586
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:74405796..74408652-chr6:74422583..74424647,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000231652	Chromatin interaction
ENSG00000156535	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs41265543	1.00[EUR][1000 genomes]
rs41266759	1.00[EUR][1000 genomes]
rs55687737	1.00[EUR][1000 genomes]
rs58538884	1.00[EUR][1000 genomes]
rs60516762	1.00[EUR][1000 genomes]
rs6909346	1.00[EUR][1000 genomes]
rs6930349	1.00[EUR][1000 genomes]
rs73452548	1.00[EUR][1000 genomes]
rs73754636	1.00[EUR][1000 genomes]
rs73754640	1.00[EUR][1000 genomes]
rs73755069	1.00[EUR][1000 genomes]
rs73755077	1.00[EUR][1000 genomes]
rs73755081	1.00[EUR][1000 genomes]
rs73755082	1.00[EUR][1000 genomes]
rs73755085	1.00[EUR][1000 genomes]
rs9442927	1.00[EUR][1000 genomes]
rs9446934	1.00[EUR][1000 genomes]
rs9446936	1.00[EUR][1000 genomes]
rs9446937	1.00[EUR][1000 genomes]
rs9446956	1.00[EUR][1000 genomes]
rs9446969	1.00[EUR][1000 genomes]
rs9446971	1.00[EUR][1000 genomes]
rs9446974	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886158	chr6:74126084-74436825	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	179 gene(s)	inside rSNPs	diseases
2	nsv1027968	chr6:74155378-74521923	Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
3	nsv538305	chr6:74155378-74521923	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
4	nsv1023250	chr6:74189642-74605976	Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
5	nsv538306	chr6:74189642-74605976	Strong transcription Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
6	nsv1029927	chr6:74300496-74424355	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
7	nsv463154	chr6:74412048-74775904	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
8	nsv603695	chr6:74412048-74775904	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74407200-74423800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr6:74407200-74424800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr6:74407400-74423000	Weak transcription	Fetal Muscle Leg	muscle
4	chr6:74407600-74424000	Weak transcription	Right Ventricle	heart
5	chr6:74408000-74446800	Weak transcription	Dnd41	blood
6	chr6:74412800-74423600	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr6:74414400-74423000	Weak transcription	Primary T cells from cord blood	blood
8	chr6:74414400-74423200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr6:74414400-74424000	Weak transcription	Placenta	Placenta
10	chr6:74414600-74423000	Weak transcription	Fetal Thymus	thymus
11	chr6:74414800-74422600	Weak transcription	Stomach Smooth Muscle	stomach
12	chr6:74414800-74423200	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr6:74414800-74474600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr6:74415200-74423000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:74415200-74432200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr6:74417000-74423200	Weak transcription	Lung	lung
17	chr6:74417000-74424000	Weak transcription	Esophagus	oesophagus
18	chr6:74417400-74423400	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr6:74417400-74423800	Weak transcription	Thymus	Thymus
20	chr6:74420200-74422600	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr6:74420200-74422600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr6:74420400-74423000	Enhancers	Placenta Amnion	Placenta Amnion
23	chr6:74420400-74425200	Enhancers	Primary hematopoietic stem cells	blood
24	chr6:74420600-74422600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:74420600-74423000	Weak transcription	Right Atrium	heart
26	chr6:74420600-74423200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr6:74420600-74423200	Weak transcription	Osteobl	bone
28	chr6:74420800-74423000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr6:74420800-74423000	Weak transcription	Brain Substantia Nigra	brain
30	chr6:74421000-74422600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr6:74421000-74423000	Weak transcription	Left Ventricle	heart
32	chr6:74421000-74423200	Weak transcription	NH-A	brain
33	chr6:74421000-74423400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr6:74421000-74423600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr6:74421000-74423800	Weak transcription	NHLF	lung
36	chr6:74421000-74424600	Weak transcription	Hela-S3	cervix
37	chr6:74421000-74432200	Weak transcription	HSMM	muscle
38	chr6:74421200-74422600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr6:74421200-74423200	Weak transcription	NHEK	skin
40	chr6:74421200-74423800	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr6:74421200-74423800	Weak transcription	HMEC	breast
42	chr6:74421800-74422800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr6:74421800-74423400	Enhancers	A549	lung
44	chr6:74422000-74422800	Enhancers	Rectal Smooth Muscle	rectum
45	chr6:74422000-74423200	Enhancers	HUVEC	blood vessel
46	chr6:74422000-74424200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr6:74422200-74422600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr6:74422200-74422800	Enhancers	Colon Smooth Muscle	Colon
49	chr6:74422200-74422800	Enhancers	NHDF-Ad	bronchial
50	chr6:74422200-74423000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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