Variant report

Variant	rs9446956
Chromosome Location	chr6:74341041-74341042
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:74339411..74341466-chr6:74345966..74347620,2	K562	blood:
2	chr6:74228508..74231368-chr6:74339913..74342882,2	K562	blood:

Variant related genes	Relation type
ENSG00000156508	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs41265543	1.00[EUR][1000 genomes]
rs41266759	1.00[EUR][1000 genomes]
rs45571640	1.00[EUR][1000 genomes]
rs55687737	1.00[EUR][1000 genomes]
rs6909346	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6930349	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73450693	1.00[EUR][1000 genomes]
rs73452548	1.00[EUR][1000 genomes]
rs73754635	1.00[AMR][1000 genomes]
rs73754636	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73754640	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73755069	1.00[EUR][1000 genomes]
rs9293936	1.00[AMR][1000 genomes]
rs9442927	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9442928	1.00[AMR][1000 genomes]
rs9446934	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446936	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446937	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9446969	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446971	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446974	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv886158	chr6:74126084-74436825	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	179 gene(s)	inside rSNPs	diseases
3	nsv1027968	chr6:74155378-74521923	Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
4	nsv538305	chr6:74155378-74521923	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
5	nsv1017716	chr6:74173173-74401162	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	170 gene(s)	inside rSNPs	diseases
6	nsv1023250	chr6:74189642-74605976	Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
7	nsv538306	chr6:74189642-74605976	Strong transcription Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
8	nsv603694	chr6:74275405-74365807	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
9	nsv1029927	chr6:74300496-74424355	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
10	nsv1027691	chr6:74302980-74417450	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
11	nsv886160	chr6:74305276-74341589	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	esv15081	chr6:74340320-74342249	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	esv3474094	chr6:74340468-74342727	Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv3474095	chr6:74340468-74342727	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74296400-74354800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:74296400-74354800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:74296400-74355000	Weak transcription	Fetal Brain Male	brain
4	chr6:74296600-74344000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:74297000-74361800	Weak transcription	GM12878-XiMat	blood
6	chr6:74303400-74355000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr6:74307200-74362400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:74307600-74356400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:74311200-74355000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr6:74314200-74362800	Weak transcription	Stomach Mucosa	stomach
11	chr6:74314400-74346400	Weak transcription	Psoas Muscle	Psoas
12	chr6:74315200-74348800	Weak transcription	HMEC	breast
13	chr6:74315400-74345200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr6:74315600-74362800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:74316200-74347000	Strong transcription	Fetal Intestine Small	intestine
16	chr6:74316400-74349200	Weak transcription	HUVEC	blood vessel
17	chr6:74316600-74355000	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr6:74318400-74350000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:74318400-74355000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr6:74318800-74355200	Weak transcription	Colonic Mucosa	Colon
21	chr6:74319000-74341200	Weak transcription	NH-A	brain
22	chr6:74319600-74354800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr6:74319800-74354800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr6:74320800-74341200	Weak transcription	Brain Angular Gyrus	brain
25	chr6:74322800-74341200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr6:74324600-74362800	Weak transcription	Pancreas	Pancrea
27	chr6:74324800-74342200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr6:74324800-74361600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr6:74325000-74341200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr6:74325000-74341200	Weak transcription	Esophagus	oesophagus
31	chr6:74325000-74342200	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr6:74325000-74342200	Weak transcription	Brain Germinal Matrix	brain
33	chr6:74325000-74344000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr6:74325000-74346000	Weak transcription	Brain Cingulate Gyrus	brain
35	chr6:74325000-74348800	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr6:74325000-74349400	Weak transcription	Rectal Smooth Muscle	rectum
37	chr6:74325000-74354800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr6:74325000-74355200	Weak transcription	HSMM	muscle
39	chr6:74325200-74341200	Weak transcription	Dnd41	blood
40	chr6:74325200-74342200	Weak transcription	Fetal Thymus	thymus
41	chr6:74325200-74345800	Weak transcription	Primary hematopoietic stem cells	blood
42	chr6:74325200-74355000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr6:74325400-74345800	Weak transcription	NHDF-Ad	bronchial
44	chr6:74325400-74362800	Weak transcription	Small Intestine	intestine
45	chr6:74328600-74350000	Weak transcription	Fetal Heart	heart
46	chr6:74330600-74342400	Weak transcription	Liver	Liver
47	chr6:74333600-74348200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr6:74334000-74353000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr6:74335200-74352400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr6:74335400-74346000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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