Variant report

Variant	rs9293936
Chromosome Location	chr6:74357519-74357520
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:74220976..74234980-chr6:74352572..74366941,62	K562	blood:
2	chr6:74356303..74357984-chr6:74363745..74365515,2	K562	blood:
3	chr6:74219718..74234750-chr6:74354945..74369231,56	K562	blood:
4	chr6:74228067..74234767-chr6:74357105..74365312,16	MCF-7	breast:
5	chr6:74229233..74232695-chr6:74356669..74359721,3	MCF-7	breast:
6	chr6:74353596..74359738-chr6:74361541..74364786,8	MCF-7	breast:
7	chr6:74356240..74358811-chr6:74359170..74360800,2	MCF-7	breast:
8	chr6:74355210..74358069-chr6:74359193..74361548,3	K562	blood:
9	chr6:74354143..74358709-chr6:74361254..74364709,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000119899	Chromatin interaction
ENSG00000229862	Chromatin interaction
ENSG00000156508	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs6909346	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6930349	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73754635	1.00[AMR][1000 genomes]
rs73754636	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73754640	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9442927	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9442928	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9446934	1.00[AMR][1000 genomes]
rs9446936	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9446937	0.89[AFR][1000 genomes]
rs9446956	1.00[AMR][1000 genomes]
rs9446969	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9446971	1.00[AMR][1000 genomes]
rs9446974	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv886158	chr6:74126084-74436825	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	179 gene(s)	inside rSNPs	diseases
3	nsv1027968	chr6:74155378-74521923	Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
4	nsv538305	chr6:74155378-74521923	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
5	nsv1017716	chr6:74173173-74401162	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	170 gene(s)	inside rSNPs	diseases
6	nsv1023250	chr6:74189642-74605976	Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
7	nsv538306	chr6:74189642-74605976	Strong transcription Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
8	nsv603694	chr6:74275405-74365807	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
9	nsv1029927	chr6:74300496-74424355	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
10	nsv1027691	chr6:74302980-74417450	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74297000-74361800	Weak transcription	GM12878-XiMat	blood
2	chr6:74307200-74362400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:74314200-74362800	Weak transcription	Stomach Mucosa	stomach
4	chr6:74315600-74362800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:74324600-74362800	Weak transcription	Pancreas	Pancrea
6	chr6:74324800-74361600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr6:74325400-74362800	Weak transcription	Small Intestine	intestine
8	chr6:74339200-74362800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:74341400-74360400	Weak transcription	HepG2	liver
10	chr6:74341600-74362800	Weak transcription	Esophagus	oesophagus
11	chr6:74341600-74362800	Weak transcription	Gastric	stomach
12	chr6:74341800-74362600	Weak transcription	Brain Substantia Nigra	brain
13	chr6:74342000-74362800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr6:74342400-74362800	Weak transcription	Lung	lung
15	chr6:74342400-74362800	Weak transcription	Spleen	Spleen
16	chr6:74343200-74362600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:74346000-74362200	Weak transcription	Hela-S3	cervix
18	chr6:74347200-74362800	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr6:74348400-74358200	Weak transcription	HSMMtube	muscle
20	chr6:74349000-74361600	Weak transcription	Dnd41	blood
21	chr6:74349600-74362800	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr6:74350600-74362600	Weak transcription	Fetal Heart	heart
23	chr6:74351600-74358200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr6:74351600-74362400	Weak transcription	Right Ventricle	heart
25	chr6:74352600-74361600	Weak transcription	Liver	Liver
26	chr6:74355400-74359200	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr6:74355600-74361800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr6:74355600-74362400	Weak transcription	Primary B cells from peripheral blood	blood
29	chr6:74355600-74362400	Weak transcription	Thymus	Thymus
30	chr6:74355600-74362800	Weak transcription	Left Ventricle	heart
31	chr6:74355800-74357600	Weak transcription	Primary T cells from cord blood	blood
32	chr6:74355800-74358000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr6:74355800-74358000	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr6:74355800-74358000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr6:74355800-74358000	Weak transcription	Fetal Muscle Trunk	muscle
36	chr6:74355800-74358000	Weak transcription	Placenta	Placenta
37	chr6:74355800-74358000	Weak transcription	HSMM	muscle
38	chr6:74355800-74358000	Weak transcription	NH-A	brain
39	chr6:74355800-74358200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr6:74355800-74358800	Weak transcription	Fetal Intestine Small	intestine
41	chr6:74355800-74359000	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr6:74355800-74359000	Weak transcription	Fetal Muscle Leg	muscle
43	chr6:74355800-74359400	Weak transcription	Fetal Stomach	stomach
44	chr6:74355800-74359600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr6:74355800-74361600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr6:74355800-74361600	Weak transcription	Brain Hippocampus Middle	brain
47	chr6:74355800-74361800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr6:74355800-74361800	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr6:74355800-74361800	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr6:74355800-74362000	Weak transcription	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links