Variant report

Variant	rs4559849
Chromosome Location	chr14:105499783-105499784
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:20)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:20 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:105499189..105502656-chr14:105506829..105510545,6	MCF-7	breast:
2	chr14:105328943..105332995-chr14:105497838..105501584,6	MCF-7	breast:
3	chr14:105433924..105437104-chr14:105498642..105500962,4	MCF-7	breast:
4	chr14:105445779..105447281-chr14:105498227..105500995,2	MCF-7	breast:
5	chr14:105447672..105451166-chr14:105499426..105503853,4	MCF-7	breast:
6	chr14:105437131..105440834-chr14:105498624..105501222,7	MCF-7	breast:
7	chr14:105486985..105489624-chr14:105496760..105500149,4	K562	blood:
8	chr14:105432138..105440616-chr14:105496781..105503324,15	MCF-7	breast:
9	chr14:105451336..105453703-chr14:105499245..105500790,2	MCF-7	breast:
10	chr14:105441103..105445393-chr14:105498956..105502062,4	MCF-7	breast:
11	chr14:105499346..105501568-chr14:105503114..105506089,2	MCF-7	breast:
12	chr1:115050546..115052658-chr14:105498527..105500765,2	MCF-7	breast:
13	chr14:105499258..105501612-chr16:85499479..85501379,2	MCF-7	breast:
14	chr14:105446908..105449625-chr14:105498780..105501070,3	MCF-7	breast:
15	chr14:105497281..105500034-chr4:2219453..2221537,2	MCF-7	breast:
16	chr14:105456826..105459218-chr14:105499258..105501781,2	MCF-7	breast:
17	chr14:105499182..105500777-chr14:105502867..105506043,3	MCF-7	breast:
18	chr14:105499123..105501203-chr9:130158900..130160690,2	MCF-7	breast:
19	chr14:105449882..105456004-chr14:105498600..105502456,9	MCF-7	breast:
20	chr14:105441809..105445909-chr14:105498091..105502867,8	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000136856	Chromatin interaction
ENSG00000170779	Chromatin interaction
ENSG00000140104	Chromatin interaction
ENSG00000185567	Chromatin interaction
ENSG00000099814	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10134401	1.00[EUR][1000 genomes]
rs10136020	1.00[EUR][1000 genomes]
rs10136468	1.00[EUR][1000 genomes]
rs10136591	1.00[EUR][1000 genomes]
rs10139800	1.00[EUR][1000 genomes]
rs11850764	1.00[EUR][1000 genomes]
rs11850814	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1866828	1.00[EUR][1000 genomes]
rs1982232	1.00[EUR][1000 genomes]
rs2582566	1.00[EUR][1000 genomes]
rs2582571	1.00[EUR][1000 genomes]
rs2582572	1.00[EUR][1000 genomes]
rs2582573	1.00[EUR][1000 genomes]
rs2582576	1.00[EUR][1000 genomes]
rs2819465	1.00[EUR][1000 genomes]
rs2819466	1.00[EUR][1000 genomes]
rs28844034	1.00[EUR][1000 genomes]
rs56975679	1.00[EUR][1000 genomes]
rs57999316	1.00[EUR][1000 genomes]
rs60187408	1.00[EUR][1000 genomes]
rs60541549	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61557687	1.00[EUR][1000 genomes]
rs6576070	1.00[EUR][1000 genomes]
rs7141355	1.00[EUR][1000 genomes]
rs7143587	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73363371	1.00[EUR][1000 genomes]
rs8008799	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1828345	chr14:105100787-105803170	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
2	nsv542225	chr14:105133688-105803170	Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv542227	chr14:105157572-105803170	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	147 gene(s)	inside rSNPs	diseases
4	nsv917106	chr14:105339195-105803170	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
5	nsv456457	chr14:105404384-105555396	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
6	nsv566141	chr14:105404384-105555396	Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
7	nsv902421	chr14:105410183-105574843	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
8	nsv902422	chr14:105420215-105803170	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
9	nsv1052190	chr14:105423761-105722653	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
10	nsv902423	chr14:105430890-105803170	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
11	nsv1042303	chr14:105435649-105633544	Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
12	nsv456458	chr14:105435649-105690092	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
13	nsv566150	chr14:105435649-105690092	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
14	nsv902424	chr14:105436222-105803170	Genic enhancers Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	86 gene(s)	inside rSNPs	diseases
15	nsv566151	chr14:105459140-105555396	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
16	nsv456459	chr14:105459140-105617891	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
17	nsv566152	chr14:105459140-105617891	Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
18	nsv902425	chr14:105463936-105690092	Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
19	nsv983941	chr14:105485574-105534240	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
20	nsv9175	chr14:105496509-105688941	Enhancers Strong transcription Bivalent/Poised TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
21	esv3334391	chr14:105499770-105499940	Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:105488800-105499800	Weak transcription	Spleen	Spleen
2	chr14:105497800-105507800	Weak transcription	K562	blood
3	chr14:105499000-105500000	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr14:105499000-105500600	Active TSS	Rectal Mucosa Donor 29	rectum
5	chr14:105499200-105499800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr14:105499200-105500200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr14:105499200-105500200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr14:105499200-105500200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr14:105499200-105500200	Active TSS	Colonic Mucosa	Colon
10	chr14:105499200-105500200	Active TSS	NHDF-Ad	bronchial
11	chr14:105499200-105500400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
12	chr14:105499200-105500400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr14:105499200-105500400	Active TSS	Rectal Mucosa Donor 31	rectum
14	chr14:105499200-105500400	Active TSS	Rectal Smooth Muscle	rectum
15	chr14:105499200-105500600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr14:105499200-105500600	Bivalent/Poised TSS	Adipose Nuclei	Adipose
17	chr14:105499400-105499800	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr14:105499400-105499800	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
19	chr14:105499400-105499800	Flanking Active TSS	Primary B cells from cord blood	blood
20	chr14:105499400-105499800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr14:105499400-105499800	Active TSS	Fetal Intestine Small	intestine
22	chr14:105499400-105499800	Enhancers	Placenta Amnion	Placenta Amnion
23	chr14:105499400-105500000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr14:105499400-105500000	Active TSS	Skeletal Muscle Male	skeletal muscle
25	chr14:105499400-105500000	Active TSS	Stomach Smooth Muscle	stomach
26	chr14:105499400-105500200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
27	chr14:105499400-105500200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr14:105499400-105500200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
29	chr14:105499400-105500200	Active TSS	Primary T regulatory cells fromperipheralblood	blood
30	chr14:105499400-105500200	Active TSS	Primary T killer naive cells fromperipheralblood	blood
31	chr14:105499400-105500200	Bivalent/Poised TSS	Liver	Liver
32	chr14:105499400-105500200	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
33	chr14:105499400-105500200	Active TSS	Duodenum Smooth Muscle	Duodenum
34	chr14:105499400-105500200	Bivalent/Poised TSS	Fetal Kidney	kidney
35	chr14:105499400-105500200	Bivalent/Poised TSS	Fetal Thymus	thymus
36	chr14:105499400-105500200	Active TSS	Pancreas	Pancrea
37	chr14:105499400-105500200	ZNF genes & repeats	GM12878-XiMat	blood
38	chr14:105499400-105500400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
39	chr14:105499400-105500400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr14:105499400-105500400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
41	chr14:105499400-105500400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
42	chr14:105499400-105500400	Active TSS	Primary T cells fromperipheralblood	blood
43	chr14:105499400-105500400	Active TSS	Primary hematopoietic stem cells	blood
44	chr14:105499400-105500400	Active TSS	Muscle Satellite Cultured Cells	--
45	chr14:105499400-105500400	Active TSS	Duodenum Mucosa	Duodenum
46	chr14:105499400-105500400	Active TSS	Pancreatic Islets	Pancreatic Islet
47	chr14:105499400-105500400	Bivalent/Poised TSS	Fetal Muscle Leg	muscle
48	chr14:105499400-105500400	Bivalent/Poised TSS	Left Ventricle	heart
49	chr14:105499400-105500400	Active TSS	Right Atrium	heart
50	chr14:105499400-105500400	Active TSS	Osteobl	bone

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