Variant report

Variant	rs57999316
Chromosome Location	chr14:105466898-105466899
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:105460985..105463712-chr14:105465564..105467462,2	MCF-7	breast:
2	chr14:105451381..105454080-chr14:105465956..105467472,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000140104	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10134401	1.00[EUR][1000 genomes]
rs10136020	1.00[EUR][1000 genomes]
rs10136468	1.00[EUR][1000 genomes]
rs10136591	1.00[EUR][1000 genomes]
rs10139800	1.00[EUR][1000 genomes]
rs11850764	1.00[EUR][1000 genomes]
rs11850814	1.00[EUR][1000 genomes]
rs1866828	1.00[EUR][1000 genomes]
rs1982232	1.00[EUR][1000 genomes]
rs2582566	1.00[EUR][1000 genomes]
rs2582571	1.00[EUR][1000 genomes]
rs2582572	1.00[EUR][1000 genomes]
rs2582573	1.00[EUR][1000 genomes]
rs2582576	1.00[EUR][1000 genomes]
rs2819447	1.00[ASN][1000 genomes]
rs2819465	1.00[EUR][1000 genomes]
rs2819466	1.00[EUR][1000 genomes]
rs28844034	1.00[EUR][1000 genomes]
rs4559849	1.00[EUR][1000 genomes]
rs56294432	1.00[ASN][1000 genomes]
rs56975679	1.00[EUR][1000 genomes]
rs60187408	1.00[EUR][1000 genomes]
rs60541549	1.00[EUR][1000 genomes]
rs61557687	1.00[EUR][1000 genomes]
rs6576070	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7141355	1.00[EUR][1000 genomes]
rs7143587	1.00[EUR][1000 genomes]
rs73363371	1.00[EUR][1000 genomes]
rs8008799	1.00[EUR][1000 genomes]
rs8009916	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053591	chr14:105024558-105475931	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
2	nsv542224	chr14:105024558-105475931	Bivalent Enhancer Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
3	esv1828345	chr14:105100787-105803170	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
4	nsv542225	chr14:105133688-105803170	Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
5	nsv542227	chr14:105157572-105803170	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	147 gene(s)	inside rSNPs	diseases
6	nsv917106	chr14:105339195-105803170	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
7	nsv902419	chr14:105381763-105494262	Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
8	nsv1049253	chr14:105384959-105471855	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
9	nsv456457	chr14:105404384-105555396	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
10	nsv566141	chr14:105404384-105555396	Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
11	nsv1036224	chr14:105404755-105470333	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
12	nsv902420	chr14:105410183-105494262	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
13	nsv902421	chr14:105410183-105574843	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
14	nsv902422	chr14:105420215-105803170	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
15	nsv1052190	chr14:105423761-105722653	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
16	nsv902423	chr14:105430890-105803170	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
17	nsv1042303	chr14:105435649-105633544	Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
18	nsv456458	chr14:105435649-105690092	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
19	nsv566150	chr14:105435649-105690092	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
20	nsv902424	chr14:105436222-105803170	Genic enhancers Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	86 gene(s)	inside rSNPs	diseases
21	nsv566151	chr14:105459140-105555396	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
22	nsv456459	chr14:105459140-105617891	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
23	nsv566152	chr14:105459140-105617891	Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
24	nsv902425	chr14:105463936-105690092	Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:105452800-105472800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr14:105452800-105473600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr14:105452800-105473600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr14:105453200-105473200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr14:105453200-105475600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr14:105453200-105485400	Weak transcription	Fetal Kidney	kidney
7	chr14:105453400-105472200	Weak transcription	Dnd41	blood
8	chr14:105453400-105472800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr14:105453400-105473600	Weak transcription	Colonic Mucosa	Colon
10	chr14:105453400-105474000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr14:105453400-105475600	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr14:105453400-105475800	Weak transcription	K562	blood
13	chr14:105453400-105476200	Weak transcription	NHDF-Ad	bronchial
14	chr14:105453400-105479400	Weak transcription	Brain Substantia Nigra	brain
15	chr14:105453600-105471800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr14:105453600-105471800	Weak transcription	HMEC	breast
17	chr14:105453800-105472000	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr14:105453800-105473400	Weak transcription	Primary B cells from cord blood	blood
19	chr14:105453800-105474000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr14:105453800-105476400	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr14:105453800-105478400	Weak transcription	Fetal Brain Male	brain
22	chr14:105458600-105476200	Weak transcription	Brain Angular Gyrus	brain
23	chr14:105458800-105473400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr14:105459800-105473400	Weak transcription	Hela-S3	cervix
25	chr14:105459800-105475600	Weak transcription	Left Ventricle	heart
26	chr14:105460200-105472200	Weak transcription	Spleen	Spleen
27	chr14:105460200-105472800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr14:105460200-105477600	Weak transcription	Colon Smooth Muscle	Colon
29	chr14:105460400-105470200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr14:105460400-105473800	Weak transcription	Fetal Lung	lung
31	chr14:105460400-105476200	Weak transcription	Brain Hippocampus Middle	brain
32	chr14:105460600-105473000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr14:105460600-105473400	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr14:105460800-105473600	Weak transcription	Duodenum Mucosa	Duodenum
35	chr14:105461000-105472600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr14:105461000-105475600	Weak transcription	Adipose Nuclei	Adipose
37	chr14:105461000-105475800	Weak transcription	Fetal Heart	heart
38	chr14:105461000-105477200	Weak transcription	Right Ventricle	heart
39	chr14:105461400-105470000	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr14:105462000-105473400	Weak transcription	Osteobl	bone
41	chr14:105462200-105470200	Weak transcription	Liver	Liver
42	chr14:105462200-105472800	Weak transcription	Fetal Intestine Large	intestine
43	chr14:105462600-105470200	Weak transcription	NHEK	skin
44	chr14:105462600-105472200	Weak transcription	Fetal Brain Female	brain
45	chr14:105462600-105475600	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr14:105462600-105475600	Weak transcription	Ovary	ovary
47	chr14:105462800-105476000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr14:105463000-105472000	Weak transcription	NHLF	lung
49	chr14:105463000-105472400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr14:105463200-105472000	Weak transcription	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links