Variant report

Variant	rs4560123
Chromosome Location	chr2:115889896-115889897
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10179992	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10185875	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10221691	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1850262	0.95[ASN][1000 genomes]
rs2280191	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2280192	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3924930	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4491738	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4527212	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4848382	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4849382	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4849383	0.95[ASN][1000 genomes]
rs72611955	0.95[ASN][1000 genomes]
rs7567644	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs983829	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014713	chr2:115858427-116018055	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:115882200-115892400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:115887400-115892600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr2:115887600-115893200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr2:115887600-115893400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr2:115887800-115891200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr2:115889200-115891600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr2:115889600-115890200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr2:115889600-115890400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr2:115889800-115890000	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr2:115889800-115891400	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr2:115889800-115891600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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