Variant report

Variant	rs4848382
Chromosome Location	chr2:115888895-115888896
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10179992	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10185875	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10221691	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1850262	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2280191	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2280192	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3924930	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4491738	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4527212	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4560123	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4849382	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4849383	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67137727	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67579181	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72611955	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72839255	1.00[AFR][1000 genomes]
rs72839292	1.00[AFR][1000 genomes]
rs7567644	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs983829	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014713	chr2:115858427-116018055	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:115882200-115892400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:115882400-115889800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr2:115887400-115892600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr2:115887600-115889200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr2:115887600-115889600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr2:115887600-115893200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr2:115887600-115893400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr2:115887800-115889800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr2:115887800-115889800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr2:115887800-115891200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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