Variant report

Variant	rs72839255
Chromosome Location	chr2:115971909-115971910
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1850262	1.00[AFR][1000 genomes]
rs4848382	1.00[AFR][1000 genomes]
rs4849383	1.00[AFR][1000 genomes]
rs72611955	1.00[AFR][1000 genomes]
rs72839292	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014713	chr2:115858427-116018055	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1001542	chr2:115920847-116082585	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv834339	chr2:115953298-116132979	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:115969200-115972800	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr2:115969400-115972600	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr2:115970000-115972400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr2:115970200-115973600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr2:115970600-115972800	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr2:115970600-115973000	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr2:115971000-115972600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr2:115971000-115972800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr2:115971000-115972800	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr2:115971600-115972000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
11	chr2:115971600-115972000	Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr2:115971600-115972600	Enhancers	H1 Cell Line	embryonic stem cell
13	chr2:115971600-115972600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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