Variant report
| Variant | rs67579181 |
|---|---|
| Chromosome Location | chr2:115914972-115914973 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| No data |
| No data |
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| No data |
| Variant related genes | Relation type |
|---|---|
| DPP10 | TF binding region |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs10179992 | 0.92[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs10185875 | 0.92[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs10221691 | 0.92[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs11900572 | 0.86[AFR][1000 genomes] |
| rs1850262 | 0.90[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs2280191 | 0.89[AMR][1000 genomes] |
| rs2280192 | 0.98[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs3924930 | 0.86[AMR][1000 genomes] |
| rs4491738 | 0.92[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs4527212 | 0.92[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs4848382 | 0.87[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs4849382 | 0.95[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs4849383 | 0.90[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs58110812 | 0.88[AFR][1000 genomes] |
| rs67137727 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72611955 | 0.90[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs72837554 | 0.86[AFR][1000 genomes] |
| rs7567644 | 0.92[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs983829 | 0.86[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1014713 | chr2:115858427-116018055 | Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
