Variant report

Variant	rs45607231
Chromosome Location	chr14:65269174-65269175
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65268216..65269184-chr14:65358330..65359038,4	K562	blood:
2	chr14:65264806..65267601-chr14:65268101..65270976,2	K562	blood:
3	chr14:65267486..65269217-chr14:65357718..65359262,14	MCF-7	breast:
4	chr14:65269057..65270107-chr14:65289880..65290862,3	MCF-7	breast:
5	chr14:65268763..65270591-chr14:65452749..65454968,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000257365	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1353857	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17767579	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs179383	0.84[EUR][1000 genomes]
rs2269297	0.81[EUR][1000 genomes]
rs2269302	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2285006	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs229581	0.83[EUR][1000 genomes]
rs230703	0.86[EUR][1000 genomes]
rs230704	0.86[EUR][1000 genomes]
rs3819927	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757572	chr14:65254465-65271780	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv2759994	chr14:65254465-65271780	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65232200-65274200	Weak transcription	Gastric	stomach
2	chr14:65244800-65272400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr14:65250400-65271800	Strong transcription	Fetal Muscle Leg	muscle
4	chr14:65252600-65274400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr14:65252800-65272600	Weak transcription	Psoas Muscle	Psoas
6	chr14:65254000-65282600	Weak transcription	Spleen	Spleen
7	chr14:65257200-65271600	Strong transcription	Right Ventricle	heart
8	chr14:65258000-65274200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr14:65258200-65271800	Strong transcription	Fetal Muscle Trunk	muscle
10	chr14:65258600-65272600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr14:65262000-65270400	Weak transcription	Brain Anterior Caudate	brain
12	chr14:65262000-65289800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr14:65262200-65271800	Weak transcription	Brain Angular Gyrus	brain
14	chr14:65262800-65270400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr14:65263400-65271800	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr14:65265000-65270000	Strong transcription	K562	blood
17	chr14:65265600-65269200	Strong transcription	Fetal Brain Female	brain
18	chr14:65266000-65272400	Weak transcription	Aorta	Aorta
19	chr14:65267000-65271800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr14:65267200-65271600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr14:65267200-65272000	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr14:65267200-65272200	Strong transcription	Skeletal Muscle Female	skeletal muscle
23	chr14:65267200-65272600	Weak transcription	Pancreas	Pancrea
24	chr14:65267400-65271600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr14:65267400-65271800	Weak transcription	A549	lung
26	chr14:65267400-65271800	Weak transcription	NHEK	skin
27	chr14:65267400-65272400	Weak transcription	Hela-S3	cervix
28	chr14:65267400-65273200	Weak transcription	Fetal Heart	heart
29	chr14:65267800-65272000	Strong transcription	Skeletal Muscle Male	skeletal muscle
30	chr14:65268400-65290200	Weak transcription	Brain Germinal Matrix	brain
31	chr14:65268600-65272600	Weak transcription	Left Ventricle	heart
32	chr14:65268800-65269200	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr14:65268800-65269200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr14:65269000-65269400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links