Variant report

Variant	rs2285006
Chromosome Location	chr14:65272582-65272583
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65272282..65274917-chr14:65276747..65279585,3	MCF-7	breast:
2	chr14:65263442..65265552-chr14:65270691..65273167,2	K562	blood:
3	chr14:65272312..65275235-chr14:65380241..65382678,2	K562	blood:

Variant related genes	Relation type
ENSG00000125954	Chromatin interaction
ENSG00000258289	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1353857	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1741466	0.82[CEU][hapmap]
rs17767579	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs179383	0.82[EUR][1000 genomes]
rs2269297	0.83[EUR][1000 genomes]
rs2269302	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs229581	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs230703	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs230704	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs368194	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs375510	0.81[EUR][1000 genomes]
rs3819927	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45607231	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65232200-65274200	Weak transcription	Gastric	stomach
2	chr14:65252600-65274400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr14:65252800-65272600	Weak transcription	Psoas Muscle	Psoas
4	chr14:65254000-65282600	Weak transcription	Spleen	Spleen
5	chr14:65258000-65274200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr14:65258600-65272600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr14:65262000-65289800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr14:65267200-65272600	Weak transcription	Pancreas	Pancrea
9	chr14:65267400-65273200	Weak transcription	Fetal Heart	heart
10	chr14:65268400-65290200	Weak transcription	Brain Germinal Matrix	brain
11	chr14:65268600-65272600	Weak transcription	Left Ventricle	heart
12	chr14:65269200-65272600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr14:65269200-65274400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr14:65269600-65272600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr14:65270600-65274400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr14:65271200-65272600	Weak transcription	HSMMtube	muscle
17	chr14:65271400-65289800	Weak transcription	Brain Anterior Caudate	brain
18	chr14:65271600-65273800	Weak transcription	Right Ventricle	heart
19	chr14:65271600-65274600	Enhancers	HMEC	breast
20	chr14:65271600-65274800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr14:65271600-65274800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr14:65271800-65272600	Enhancers	Muscle Satellite Cultured Cells	--
23	chr14:65271800-65272600	Enhancers	NHEK	skin
24	chr14:65271800-65272800	Enhancers	NH-A	brain
25	chr14:65271800-65273800	Weak transcription	Fetal Muscle Leg	muscle
26	chr14:65271800-65274000	Enhancers	Pancreatic Islets	Pancreatic Islet
27	chr14:65271800-65274200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr14:65271800-65274200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr14:65271800-65274200	Weak transcription	Fetal Muscle Trunk	muscle
30	chr14:65271800-65274400	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr14:65271800-65274600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr14:65272000-65272600	Genic enhancers	Skeletal Muscle Male	skeletal muscle
33	chr14:65272000-65273200	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr14:65272000-65273200	Weak transcription	K562	blood
35	chr14:65272000-65274000	Flanking Active TSS	A549	lung
36	chr14:65272200-65273800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr14:65272400-65273200	Enhancers	HUES48 Cell Line	embryonic stem cell
38	chr14:65272400-65273400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr14:65272400-65273400	Enhancers	Aorta	Aorta
40	chr14:65272400-65274600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr14:65272400-65274600	Enhancers	Hela-S3	cervix
42	chr14:65272400-65274600	Enhancers	HSMM	muscle
43	chr14:65272400-65275800	Enhancers	Skeletal Muscle Female	skeletal muscle

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