Variant report

Variant	rs368194
Chromosome Location	chr14:65277657-65277658
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65277232..65280033-chr14:65282761..65285500,2	K562	blood:
2	chr14:65272282..65274917-chr14:65276747..65279585,3	MCF-7	breast:
3	chr14:65277012..65279829-chr14:65281004..65282816,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1353857	0.86[CEU][hapmap]
rs1626923	0.81[CHD][hapmap]
rs1741466	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.98[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17767579	0.82[CEU][hapmap]
rs17767662	0.84[JPT][hapmap]
rs192036	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs2038433	0.87[EUR][1000 genomes]
rs2269295	0.87[CEU][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes]
rs2269296	0.87[CEU][hapmap];0.88[TSI][hapmap];0.87[EUR][1000 genomes]
rs2269297	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs2285006	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs229580	0.87[CEU][hapmap]
rs229587	0.87[CEU][hapmap];0.84[CHD][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes]
rs229588	0.83[CEU][hapmap];0.84[CHD][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes]
rs229589	0.83[CEU][hapmap];0.84[CHD][hapmap];0.88[TSI][hapmap]
rs229627	0.91[CEU][hapmap];0.93[GIH][hapmap];0.83[TSI][hapmap];0.80[EUR][1000 genomes]
rs229628	0.95[CEU][hapmap];0.93[GIH][hapmap];0.81[TSI][hapmap];0.80[EUR][1000 genomes]
rs229629	0.82[CHB][hapmap]
rs229672	0.83[JPT][hapmap]
rs229673	0.87[CHD][hapmap];0.84[JPT][hapmap]
rs229675	0.83[JPT][hapmap]
rs375510	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3819927	0.81[EUR][1000 genomes]
rs3819928	0.87[EUR][1000 genomes]
rs433143	0.87[EUR][1000 genomes]
rs4902317	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs8017385	0.83[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs368194	CHURC1	cis	multi-tissue	Pritchard

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65254000-65282600	Weak transcription	Spleen	Spleen
2	chr14:65262000-65289800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr14:65268400-65290200	Weak transcription	Brain Germinal Matrix	brain
4	chr14:65271400-65289800	Weak transcription	Brain Anterior Caudate	brain
5	chr14:65273000-65279200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr14:65273200-65279000	Weak transcription	Pancreas	Pancrea
7	chr14:65273400-65279000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr14:65273800-65279000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr14:65273800-65287200	Weak transcription	K562	blood
10	chr14:65274000-65278200	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr14:65274200-65278800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr14:65274400-65278400	Weak transcription	NHEK	skin
13	chr14:65274600-65278400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr14:65274600-65278400	Weak transcription	HMEC	breast
15	chr14:65274600-65279000	Weak transcription	Fetal Thymus	thymus
16	chr14:65274600-65284600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr14:65274800-65278200	Weak transcription	A549	lung
18	chr14:65274800-65278800	Weak transcription	Left Ventricle	heart
19	chr14:65274800-65279000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr14:65274800-65279000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr14:65274800-65279000	Weak transcription	Lung	lung
22	chr14:65274800-65279000	Weak transcription	Right Atrium	heart
23	chr14:65274800-65279200	Weak transcription	Fetal Heart	heart
24	chr14:65275000-65281800	Weak transcription	Right Ventricle	heart
25	chr14:65275800-65278400	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr14:65275800-65279000	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr14:65275800-65290000	Weak transcription	Psoas Muscle	Psoas
28	chr14:65277000-65278000	Weak transcription	Hela-S3	cervix
29	chr14:65277200-65277800	Enhancers	Aorta	Aorta
30	chr14:65277400-65279000	Weak transcription	Fetal Muscle Leg	muscle

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