Variant report

Variant	rs229675
Chromosome Location	chr14:65281122-65281123
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1271040	0.82[ASN][1000 genomes]
rs151165	0.84[ASN][1000 genomes]
rs1741464	1.00[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.81[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17767662	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs192036	0.84[ASN][1000 genomes]
rs2285002	0.91[CEU][hapmap]
rs229581	0.84[ASN][1000 genomes]
rs229587	0.84[ASN][1000 genomes]
rs229588	0.82[ASN][1000 genomes]
rs229589	0.82[ASN][1000 genomes]
rs229672	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs229673	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs229674	0.80[EUR][1000 genomes]
rs368194	0.83[JPT][hapmap]
rs3819928	0.83[ASN][1000 genomes]
rs433143	0.86[ASN][1000 genomes]
rs4902317	0.84[ASN][1000 genomes]
rs8017385	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521286	chr14:65277890-65281944	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65254000-65282600	Weak transcription	Spleen	Spleen
2	chr14:65262000-65289800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr14:65268400-65290200	Weak transcription	Brain Germinal Matrix	brain
4	chr14:65271400-65289800	Weak transcription	Brain Anterior Caudate	brain
5	chr14:65273800-65287200	Weak transcription	K562	blood
6	chr14:65274600-65284600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr14:65275000-65281800	Weak transcription	Right Ventricle	heart
8	chr14:65275800-65290000	Weak transcription	Psoas Muscle	Psoas
9	chr14:65279400-65282200	Weak transcription	Right Atrium	heart
10	chr14:65279400-65284200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr14:65279400-65284400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr14:65279400-65284400	Weak transcription	Aorta	Aorta
13	chr14:65279400-65284600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr14:65279400-65287000	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr14:65279600-65281600	Weak transcription	Left Ventricle	heart
16	chr14:65279600-65282400	Weak transcription	Fetal Heart	heart
17	chr14:65280200-65282800	Weak transcription	Fetal Muscle Leg	muscle
18	chr14:65280800-65281800	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr14:65280800-65283400	Weak transcription	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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