Variant report

Variant	rs3819928
Chromosome Location	chr14:65278740-65278741
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65277232..65280033-chr14:65282761..65285500,2	K562	blood:
2	chr14:65272282..65274917-chr14:65276747..65279585,3	MCF-7	breast:
3	chr14:65277012..65279829-chr14:65281004..65282816,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1271040	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs151165	0.82[AFR][1000 genomes]
rs1741464	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1741466	0.86[EUR][1000 genomes]
rs17767662	0.83[ASN][1000 genomes]
rs192036	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2038433	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2269295	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2269296	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2269297	0.84[EUR][1000 genomes]
rs229581	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs229587	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs229588	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs229589	0.87[EUR][1000 genomes]
rs229672	0.83[ASN][1000 genomes]
rs229673	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs229675	0.83[ASN][1000 genomes]
rs368194	0.87[EUR][1000 genomes]
rs375510	0.87[EUR][1000 genomes]
rs433143	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4902317	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8017385	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516768	chr14:65277890-65279944	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv521286	chr14:65277890-65281944	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65254000-65282600	Weak transcription	Spleen	Spleen
2	chr14:65262000-65289800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr14:65268400-65290200	Weak transcription	Brain Germinal Matrix	brain
4	chr14:65271400-65289800	Weak transcription	Brain Anterior Caudate	brain
5	chr14:65273000-65279200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr14:65273200-65279000	Weak transcription	Pancreas	Pancrea
7	chr14:65273400-65279000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr14:65273800-65279000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr14:65273800-65287200	Weak transcription	K562	blood
10	chr14:65274200-65278800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr14:65274600-65279000	Weak transcription	Fetal Thymus	thymus
12	chr14:65274600-65284600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr14:65274800-65278800	Weak transcription	Left Ventricle	heart
14	chr14:65274800-65279000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr14:65274800-65279000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr14:65274800-65279000	Weak transcription	Lung	lung
17	chr14:65274800-65279000	Weak transcription	Right Atrium	heart
18	chr14:65274800-65279200	Weak transcription	Fetal Heart	heart
19	chr14:65275000-65281800	Weak transcription	Right Ventricle	heart
20	chr14:65275800-65279000	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr14:65275800-65290000	Weak transcription	Psoas Muscle	Psoas
22	chr14:65277400-65279000	Weak transcription	Fetal Muscle Leg	muscle
23	chr14:65277800-65278800	Weak transcription	Aorta	Aorta
24	chr14:65278000-65279600	Enhancers	Hela-S3	cervix
25	chr14:65278200-65279200	Enhancers	A549	lung
26	chr14:65278400-65278800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr14:65278400-65278800	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr14:65278400-65279000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr14:65278400-65279000	Enhancers	NHEK	skin
30	chr14:65278400-65279200	Enhancers	Liver	Liver
31	chr14:65278400-65279400	Enhancers	HMEC	breast
32	chr14:65278400-65279600	Enhancers	Primary T helper cells PMA-I stimulated	--
33	chr14:65278400-65280800	Enhancers	Skeletal Muscle Female	skeletal muscle

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