Variant report

Variant	rs45617632
Chromosome Location	chr6:25166439-25166440
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6456652	0.86[EUR][1000 genomes]
rs6902503	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023989	chr6:24930362-25285679	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv830611	chr6:25039374-25199112	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1025694	chr6:25136860-25309450	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv1020774	chr6:25154152-25285679	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv538161	chr6:25154152-25285679	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv462663	chr6:25156197-25234884	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv601167	chr6:25156197-25234884	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25159600-25168800	Weak transcription	Placenta	Placenta
2	chr6:25164600-25166600	Active TSS	Lung	lung
3	chr6:25164600-25167000	Active TSS	Rectal Mucosa Donor 29	rectum
4	chr6:25164600-25167200	Active TSS	Thymus	Thymus
5	chr6:25164800-25173800	Weak transcription	Colon Smooth Muscle	Colon
6	chr6:25165000-25166600	Active TSS	Liver	Liver
7	chr6:25165000-25166600	Enhancers	Stomach Mucosa	stomach
8	chr6:25165000-25166800	Active TSS	Rectal Smooth Muscle	rectum
9	chr6:25165400-25167000	Active TSS	Aorta	Aorta
10	chr6:25165400-25167800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:25165400-25167800	Flanking Active TSS	Dnd41	blood
12	chr6:25165400-25169200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:25165600-25167800	Flanking Active TSS	Primary hematopoietic stem cells	blood
14	chr6:25165600-25177000	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr6:25165800-25166800	Flanking Active TSS	Primary T cells from cord blood	blood
16	chr6:25165800-25167800	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr6:25166000-25166600	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr6:25166000-25166600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
19	chr6:25166000-25167000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:25166000-25167200	Bivalent Enhancer	Fetal Heart	heart
21	chr6:25166000-25167400	Enhancers	Pancreas	Pancrea
22	chr6:25166000-25167400	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr6:25166000-25167800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
24	chr6:25166000-25167800	Flanking Active TSS	Fetal Thymus	thymus
25	chr6:25166000-25171800	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr6:25166200-25167000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr6:25166200-25167600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr6:25166200-25170400	Weak transcription	Gastric	stomach
29	chr6:25166400-25166600	Weak transcription	Fetal Intestine Large	intestine
30	chr6:25166400-25166600	Enhancers	HSMM	muscle
31	chr6:25166400-25166600	Flanking Active TSS	Osteobl	bone
32	chr6:25166400-25166800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr6:25166400-25174000	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links