Variant report

Variant	rs4562289
Chromosome Location	chr8:107868708-107868709
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107774909..107775928-chr8:107868574..107869326,4	MCF-7	breast:
2	chr8:107717278..107717963-chr8:107868271..107869380,4	K562	blood:
3	chr8:107868665..107869314-chr8:108544200..108544991,2	MCF-7	breast:
4	chr8:107857946..107858782-chr8:107868419..107869393,13	MCF-7	breast:
5	chr8:107777184..107778060-chr8:107868481..107869205,4	MCF-7	breast:
6	chr8:107774648..107776061-chr8:107868448..107869328,4	K562	blood:
7	chr8:107857830..107858766-chr8:107868427..107868948,2	MCF-7	breast:
8	chr8:107717038..107717971-chr8:107868547..107869164,2	MCF-7	breast:
9	chr8:107775413..107775971-chr8:107868475..107869338,2	MCF-7	breast:
10	chr8:107716793..107717867-chr8:107868568..107869413,5	MCF-7	breast:
11	chr8:107777116..107778171-chr8:107868404..107869398,4	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2981196	0.86[ASN][1000 genomes]
rs2981199	0.86[ASN][1000 genomes]
rs2981227	0.86[ASN][1000 genomes]
rs3018927	0.86[ASN][1000 genomes]
rs3018928	0.86[ASN][1000 genomes]
rs3018929	0.86[ASN][1000 genomes]
rs3018931	0.86[ASN][1000 genomes]
rs3018934	0.86[ASN][1000 genomes]
rs3116137	0.86[ASN][1000 genomes]
rs998880	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029202	chr8:107796289-108384241	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv539712	chr8:107796289-108384241	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1034210	chr8:107796489-108384102	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv539713	chr8:107796489-108384102	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv529383	chr8:107796490-108368465	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv915821	chr8:107796490-108393008	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv916496	chr8:107813722-108338822	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1028726	chr8:107816841-108392547	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv465756	chr8:107838892-107872577	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv611847	chr8:107838892-107872577	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv465757	chr8:107846295-107893477	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv611848	chr8:107846295-107893477	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv497805	chr8:107852509-108368371	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107868200-107869800	Enhancers	NHDF-Ad	bronchial
2	chr8:107868400-107869600	Enhancers	Muscle Satellite Cultured Cells	--
3	chr8:107868400-107869800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:107868400-107871200	Enhancers	NHLF	lung
5	chr8:107868600-107868800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr8:107868600-107869000	Enhancers	NHEK	skin
7	chr8:107868600-107869600	Enhancers	HSMMtube	muscle
8	chr8:107868600-107869800	Enhancers	A549	lung
9	chr8:107868600-107869800	Enhancers	NH-A	brain
10	chr8:107868600-107870200	Enhancers	HSMM	muscle
11	chr8:107868600-107870600	Enhancers	Skeletal Muscle Male	skeletal muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links