Variant report

Variant	rs45623638
Chromosome Location	chr6:133052580-133052581
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs33961621	1.00[AMR][1000 genomes]
rs34350418	1.00[AMR][1000 genomes]
rs34779779	1.00[AMR][1000 genomes]
rs34787687	1.00[AMR][1000 genomes]
rs34925225	1.00[AMR][1000 genomes]
rs35576345	1.00[AMR][1000 genomes]
rs35708929	1.00[AMR][1000 genomes]
rs35934863	1.00[AMR][1000 genomes]
rs45442793	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs45470599	1.00[AMR][1000 genomes]
rs45518139	1.00[AMR][1000 genomes]
rs45610235	1.00[AMR][1000 genomes]
rs45617337	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56889761	1.00[AMR][1000 genomes]
rs58598730	1.00[AMR][1000 genomes]
rs60611103	1.00[AMR][1000 genomes]
rs73550462	1.00[AMR][1000 genomes]
rs73550486	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133034800-133053200	Weak transcription	Placenta	Placenta
2	chr6:133038000-133053400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr6:133044400-133066200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr6:133050200-133055600	Weak transcription	NHDF-Ad	bronchial
5	chr6:133050400-133052600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:133051200-133052800	Enhancers	NHLF	lung
7	chr6:133051400-133052600	Enhancers	Hela-S3	cervix
8	chr6:133051400-133052800	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr6:133051600-133052600	Enhancers	HepG2	liver
10	chr6:133051600-133052800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:133051600-133053800	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr6:133051800-133052600	Enhancers	Fetal Lung	lung
13	chr6:133052000-133055000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr6:133052000-133055400	Active TSS	Primary B cells from cord blood	blood
15	chr6:133052200-133053000	Flanking Active TSS	Liver	Liver
16	chr6:133052200-133056000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:133052400-133052800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chr6:133052400-133053400	Transcr. at gene 5' and 3'	Primary neutrophils fromperipheralblood	blood
19	chr6:133052400-133058800	Enhancers	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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