Variant report

Variant	rs73550462
Chromosome Location	chr6:133100322-133100323
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:133082471..133084490-chr6:133097635..133100360,2	MCF-7	breast:
2	chr6:133099914..133102330-chr6:133103703..133105821,2	K562	blood:
3	chr6:132920313..132923213-chr6:133099662..133102156,2	K562	blood:
4	chr6:133098906..133100872-chr6:133105715..133108486,2	K562	blood:
5	chr6:133089987..133091533-chr6:133099189..133101057,2	MCF-7	breast:
6	chr6:133099935..133101635-chr6:133134630..133137192,2	MCF-7	breast:
7	chr6:133098988..133101472-chr6:133113215..133115777,2	K562	blood:
8	chr6:133096911..133098792-chr6:133099700..133101688,2	K562	blood:
9	chr6:133098827..133101741-chr6:133134518..133137277,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000112306	Chromatin interaction
ENSG00000206754	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs33961621	1.00[AMR][1000 genomes]
rs34350418	1.00[AMR][1000 genomes]
rs34779779	1.00[AMR][1000 genomes]
rs34787687	1.00[AMR][1000 genomes]
rs34925225	1.00[AMR][1000 genomes]
rs35576345	1.00[AMR][1000 genomes]
rs35708929	1.00[AMR][1000 genomes]
rs35934863	1.00[AMR][1000 genomes]
rs45442793	1.00[AMR][1000 genomes]
rs45470599	1.00[AMR][1000 genomes]
rs45518139	1.00[AMR][1000 genomes]
rs45610235	1.00[AMR][1000 genomes]
rs45617337	1.00[AMR][1000 genomes]
rs45623638	1.00[AMR][1000 genomes]
rs56889761	1.00[AMR][1000 genomes]
rs58598730	1.00[AMR][1000 genomes]
rs60611103	1.00[AMR][1000 genomes]
rs73550486	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133083800-133118200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr6:133085000-133109000	Weak transcription	GM12878-XiMat	blood
3	chr6:133085000-133114600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr6:133085000-133119000	Weak transcription	Thymus	Thymus
5	chr6:133085200-133112200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr6:133085200-133119400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:133085400-133114400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr6:133085600-133118800	Weak transcription	Colon Smooth Muscle	Colon
9	chr6:133085800-133119000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr6:133086000-133112800	Weak transcription	Hela-S3	cervix
11	chr6:133086000-133113800	Weak transcription	NHEK	skin
12	chr6:133086000-133118800	Weak transcription	Fetal Kidney	kidney
13	chr6:133086200-133107800	Weak transcription	Osteobl	bone
14	chr6:133086400-133110200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:133086600-133103400	Weak transcription	Brain Anterior Caudate	brain
16	chr6:133088200-133111200	Weak transcription	HUVEC	blood vessel
17	chr6:133088600-133114600	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr6:133089400-133104400	Weak transcription	Brain Germinal Matrix	brain
19	chr6:133089400-133110400	Weak transcription	Colonic Mucosa	Colon
20	chr6:133089400-133111800	Weak transcription	Lung	lung
21	chr6:133089400-133119400	Weak transcription	Gastric	stomach
22	chr6:133089600-133102000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr6:133089600-133111400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr6:133089600-133111400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr6:133089600-133111800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr6:133089600-133118800	Weak transcription	Fetal Heart	heart
27	chr6:133089600-133119000	Weak transcription	Primary hematopoietic stem cells	blood
28	chr6:133089600-133119200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr6:133089600-133119200	Weak transcription	Right Ventricle	heart
30	chr6:133089600-133119200	Weak transcription	Stomach Mucosa	stomach
31	chr6:133089600-133119400	Weak transcription	Pancreas	Pancrea
32	chr6:133089800-133118200	Weak transcription	Fetal Brain Male	brain
33	chr6:133089800-133118800	Weak transcription	Brain Angular Gyrus	brain
34	chr6:133090000-133100600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr6:133090000-133118800	Weak transcription	HepG2	liver
36	chr6:133090400-133114200	Strong transcription	Primary T helper cells fromperipheralblood	blood
37	chr6:133090600-133107800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr6:133091200-133101200	Strong transcription	Primary T cells fromperipheralblood	blood
39	chr6:133091800-133119000	Weak transcription	Psoas Muscle	Psoas
40	chr6:133093200-133101600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr6:133094000-133110200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr6:133096000-133100600	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr6:133096400-133101600	Strong transcription	Primary T helper cells PMA-I stimulated	--
44	chr6:133096600-133100600	Strong transcription	Duodenum Mucosa	Duodenum
45	chr6:133096800-133100800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr6:133096800-133104800	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr6:133097000-133100400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
48	chr6:133097000-133100600	Strong transcription	Duodenum Smooth Muscle	Duodenum
49	chr6:133097000-133101400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr6:133097000-133101600	Strong transcription	Primary T cells from cord blood	blood

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