Variant report

Variant	rs4567468
Chromosome Location	chr11:67079505-67079506
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:67075683..67087551-chr11:67114391..67125856,27	MCF-7	breast:
2	chr11:67053008..67062318-chr11:67075341..67086484,24	K562	blood:
3	chr11:66844181..66847775-chr11:67079244..67082122,3	MCF-7	breast:
4	chr11:67074098..67077679-chr11:67077788..67081102,4	K562	blood:
5	chr11:67079164..67081623-chr11:67380659..67383359,2	MCF-7	breast:
6	chr11:67079496..67081238-chr11:67272616..67275182,2	K562	blood:
7	chr11:67078342..67081725-chr11:67139517..67143464,5	MCF-7	breast:
8	chr11:67077940..67083214-chr11:67140082..67142904,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000110697	Chromatin interaction
ENSG00000231793	Chromatin interaction
ENSG00000172830	Chromatin interaction
ENSG00000256514	Chromatin interaction
ENSG00000175482	Chromatin interaction
ENSG00000175505	Chromatin interaction
ENSG00000172932	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12279818	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12285097	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12417116	0.93[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12417770	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12418407	0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12420556	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12421018	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1573536	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1574103	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17148183	0.87[AMR][1000 genomes]
rs17880138	0.86[ASN][1000 genomes]
rs17885585	0.86[ASN][1000 genomes]
rs2066494	0.86[ASN][1000 genomes]
rs28364240	0.83[AMR][1000 genomes]
rs3730140	0.92[AMR][1000 genomes]
rs4084238	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4382915	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4930198	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4930415	0.86[ASN][1000 genomes]
rs4930416	0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs61731786	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61758493	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs61759803	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs61759806	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7396248	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs868167	0.80[ASN][1000 genomes]
rs885833	0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs887315	0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs887316	0.86[ASN][1000 genomes]
rs887318	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv933183	chr11:67008447-67160993	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	nsv897796	chr11:67021518-67186000	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
4	nsv897797	chr11:67023040-67293234	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	206 gene(s)	inside rSNPs	diseases
5	nsv897800	chr11:67024534-67086298	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
6	nsv1043037	chr11:67027193-67357425	Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
7	nsv468603	chr11:67033076-67164495	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
8	nsv555253	chr11:67033076-67164495	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
9	nsv897801	chr11:67033076-67432479	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	236 gene(s)	inside rSNPs	diseases
10	nsv1047890	chr11:67058231-67184436	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
11	nsv1048230	chr11:67058231-67252397	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	146 gene(s)	inside rSNPs	diseases
12	nsv897803	chr11:67067075-67084761	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:67070200-67084400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:67070400-67083800	Weak transcription	Dnd41	blood
3	chr11:67071800-67084400	Weak transcription	Fetal Kidney	kidney
4	chr11:67072000-67080000	Weak transcription	Primary B cells from peripheral blood	blood
5	chr11:67072000-67084000	Weak transcription	HUVEC	blood vessel
6	chr11:67072200-67079800	Weak transcription	Primary T cells from cord blood	blood
7	chr11:67072200-67084000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr11:67072200-67084000	Weak transcription	Brain Germinal Matrix	brain
9	chr11:67072200-67084400	Weak transcription	Fetal Brain Female	brain
10	chr11:67072400-67079800	Strong transcription	Fetal Intestine Small	intestine
11	chr11:67072400-67080000	Weak transcription	Primary hematopoietic stem cells	blood
12	chr11:67072400-67084400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr11:67072400-67084400	Weak transcription	HSMMtube	muscle
14	chr11:67072400-67084400	Weak transcription	NHDF-Ad	bronchial
15	chr11:67072400-67084600	Weak transcription	Small Intestine	intestine
16	chr11:67073200-67080200	Weak transcription	HepG2	liver
17	chr11:67073200-67080400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr11:67073400-67084400	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr11:67073600-67081000	Strong transcription	Fetal Stomach	stomach
20	chr11:67073800-67079600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr11:67074200-67079600	Strong transcription	Duodenum Mucosa	Duodenum
22	chr11:67074200-67079600	Strong transcription	Gastric	stomach
23	chr11:67074400-67079600	Strong transcription	Liver	Liver
24	chr11:67074400-67079600	Strong transcription	Lung	lung
25	chr11:67074400-67079600	Strong transcription	Right Ventricle	heart
26	chr11:67074600-67079600	Strong transcription	Adipose Nuclei	Adipose
27	chr11:67074800-67079600	Strong transcription	HUES6 Cell Line	embryonic stem cell
28	chr11:67074800-67079600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr11:67075800-67084400	Weak transcription	Rectal Smooth Muscle	rectum
30	chr11:67076400-67079600	Genic enhancers	Placenta	Placenta
31	chr11:67076400-67084400	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr11:67077000-67079800	Strong transcription	Fetal Muscle Trunk	muscle
33	chr11:67077000-67082000	Enhancers	HMEC	breast
34	chr11:67077000-67084400	Weak transcription	Thymus	Thymus
35	chr11:67077200-67082000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr11:67077400-67084200	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr11:67077400-67084400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr11:67077400-67084400	Weak transcription	Brain Angular Gyrus	brain
39	chr11:67077600-67079600	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr11:67077600-67079800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
41	chr11:67077600-67080800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr11:67077600-67084000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr11:67077600-67084000	Weak transcription	Osteobl	bone
44	chr11:67077800-67079600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr11:67077800-67080600	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr11:67077800-67083200	Enhancers	Breast Myoepithelial Primary Cells	Breast
47	chr11:67077800-67084200	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr11:67078000-67080000	Genic enhancers	Spleen	Spleen
49	chr11:67078000-67081400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
50	chr11:67078000-67084000	Weak transcription	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links