Variant report

Variant	rs61759806
Chromosome Location	chr11:67038588-67038589
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12279818	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12285097	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12417116	0.91[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12417770	0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12417887	0.86[ASN][1000 genomes]
rs12418407	0.82[AMR][1000 genomes]
rs12419315	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12420479	0.86[ASN][1000 genomes]
rs12420556	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12420594	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs12420763	0.83[AMR][1000 genomes]
rs12421018	0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12421536	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1573536	0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1574103	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17148080	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs17148183	0.85[AMR][1000 genomes]
rs2066494	0.85[AFR][1000 genomes]
rs28364240	0.81[AMR][1000 genomes]
rs3730140	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4084238	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4382915	0.88[AMR][1000 genomes]
rs4567468	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4930198	0.83[AMR][1000 genomes]
rs4930414	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs4930415	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4930416	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61525626	0.88[AMR][1000 genomes]
rs61731786	0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs61758493	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61759803	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61763963	1.00[EUR][1000 genomes]
rs7396248	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs885833	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs887315	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv933183	chr11:67008447-67160993	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	nsv897796	chr11:67021518-67186000	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
4	nsv897797	chr11:67023040-67293234	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	206 gene(s)	inside rSNPs	diseases
5	nsv897798	chr11:67024534-67065858	Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
6	nsv897799	chr11:67024534-67072623	Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
7	nsv897800	chr11:67024534-67086298	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
8	nsv1043037	chr11:67027193-67357425	Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
9	nsv468603	chr11:67033076-67164495	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
10	nsv555253	chr11:67033076-67164495	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
11	nsv897801	chr11:67033076-67432479	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	236 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:67034400-67039200	Flanking Active TSS	Stomach Smooth Muscle	stomach
2	chr11:67034400-67041400	Flanking Active TSS	Primary B cells from cord blood	blood
3	chr11:67034600-67039400	Flanking Active TSS	Primary hematopoietic stem cells	blood
4	chr11:67034600-67040800	Transcr. at gene 5' and 3'	Dnd41	blood
5	chr11:67034600-67041400	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells short term culture	blood
6	chr11:67034800-67039000	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
7	chr11:67034800-67039800	Transcr. at gene 5' and 3'	Primary B cells from peripheral blood	blood
8	chr11:67034800-67041000	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr11:67035000-67040400	Transcr. at gene 5' and 3'	Primary monocytes fromperipheralblood	blood
10	chr11:67035000-67040400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr11:67035000-67040400	Transcr. at gene 5' and 3'	Primary mononuclear cells fromperipheralblood	Blood
12	chr11:67035000-67040400	Transcr. at gene 5' and 3'	Thymus	Thymus
13	chr11:67035000-67040800	Weak transcription	Ovary	ovary
14	chr11:67035200-67039400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
15	chr11:67035200-67039600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
16	chr11:67035200-67039600	Transcr. at gene 5' and 3'	Primary Natural Killer cells fromperipheralblood	blood
17	chr11:67035200-67039800	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
18	chr11:67035200-67040400	Transcr. at gene 5' and 3'	Fetal Thymus	thymus
19	chr11:67035400-67038600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr11:67035400-67040800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
21	chr11:67035400-67044400	Weak transcription	A549	lung
22	chr11:67035600-67040000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
23	chr11:67035600-67041200	Genic enhancers	Gastric	stomach
24	chr11:67035600-67041400	Enhancers	Fetal Heart	heart
25	chr11:67035600-67041600	Flanking Active TSS	Primary T cells from cord blood	blood
26	chr11:67035600-67046400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
27	chr11:67035800-67038800	Genic enhancers	Sigmoid Colon	Sigmoid Colon
28	chr11:67035800-67044600	Enhancers	Left Ventricle	heart
29	chr11:67036000-67040400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr11:67036000-67041000	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr11:67036200-67038600	Flanking Active TSS	Brain Cingulate Gyrus	brain
32	chr11:67036200-67038800	Flanking Active TSS	Brain Hippocampus Middle	brain
33	chr11:67036200-67040600	Weak transcription	HMEC	breast
34	chr11:67036400-67038600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr11:67036600-67039000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
36	chr11:67036800-67038600	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr11:67036800-67038600	Flanking Active TSS	Adipose Nuclei	Adipose
38	chr11:67036800-67038600	Flanking Active TSS	Brain Angular Gyrus	brain
39	chr11:67036800-67038600	Enhancers	Small Intestine	intestine
40	chr11:67036800-67039600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr11:67036800-67041000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
42	chr11:67037000-67038600	Transcr. at gene 5' and 3'	Fetal Adrenal Gland	Adrenal Gland
43	chr11:67037000-67038600	Flanking Active TSS	Rectal Smooth Muscle	rectum
44	chr11:67037000-67038600	Enhancers	K562	blood
45	chr11:67037000-67038800	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr11:67037000-67038800	Transcr. at gene 5' and 3'	Fetal Muscle Trunk	muscle
47	chr11:67037000-67039000	Flanking Active TSS	Brain Anterior Caudate	brain
48	chr11:67037000-67039000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
49	chr11:67037000-67039800	Enhancers	H1 Cell Line	embryonic stem cell
50	chr11:67037000-67039800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood

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