Variant report

Variant	rs61525626
Chromosome Location	chr11:66951517-66951518
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:66949172..66951856-chr11:66972901..66974500,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12417116	0.80[AMR][1000 genomes]
rs12417770	0.82[AMR][1000 genomes]
rs12417887	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12418591	1.00[EUR][1000 genomes]
rs12419315	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12420479	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12420556	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12420594	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12420763	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12421018	0.80[AMR][1000 genomes]
rs12421536	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1573536	0.82[AMR][1000 genomes]
rs17148080	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3730140	0.85[AMR][1000 genomes]
rs4084238	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4930411	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4930414	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4930415	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4930416	0.85[AMR][1000 genomes]
rs58815002	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61731786	0.82[AMR][1000 genomes]
rs61758493	0.88[AMR][1000 genomes]
rs61759803	0.88[AMR][1000 genomes]
rs61759806	0.88[AMR][1000 genomes]
rs7396248	0.90[AMR][1000 genomes]
rs885833	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv532287	chr11:66784014-67023899	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66907800-66953000	Weak transcription	Aorta	Aorta
2	chr11:66907800-66975000	Weak transcription	Pancreas	Pancrea
3	chr11:66918800-66968000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr11:66926000-66966800	Weak transcription	Brain Angular Gyrus	brain
5	chr11:66926200-66963800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr11:66930800-66985600	Weak transcription	Small Intestine	intestine
7	chr11:66936400-66956000	Weak transcription	Fetal Heart	heart
8	chr11:66936400-67006200	Weak transcription	Stomach Mucosa	stomach
9	chr11:66942400-66955000	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr11:66942600-66952800	Weak transcription	Brain Cingulate Gyrus	brain
11	chr11:66942600-66982800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr11:66942800-66961000	Weak transcription	Gastric	stomach
13	chr11:66944000-66961200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:66945000-66954400	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr11:66945000-66956200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr11:66945000-66956600	Strong transcription	Primary B cells from peripheral blood	blood
17	chr11:66945000-66956800	Strong transcription	Dnd41	blood
18	chr11:66945000-66957000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr11:66945200-66954200	Strong transcription	Primary T cells from cord blood	blood
20	chr11:66945200-66955000	Strong transcription	Primary B cells from cord blood	blood
21	chr11:66945800-66984800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr11:66946200-66952200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr11:66946400-66955400	Strong transcription	Rectal Mucosa Donor 29	rectum
24	chr11:66946800-66954400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr11:66947000-66952200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr11:66947000-66952800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr11:66947000-66954000	Strong transcription	Sigmoid Colon	Sigmoid Colon
28	chr11:66947000-66954200	Strong transcription	Primary T helper cells fromperipheralblood	blood
29	chr11:66947000-66954600	Strong transcription	Osteobl	bone
30	chr11:66947000-66955600	Strong transcription	Primary T cells fromperipheralblood	blood
31	chr11:66947000-66956400	Strong transcription	GM12878-XiMat	blood
32	chr11:66947000-66964000	Strong transcription	Fetal Thymus	thymus
33	chr11:66947200-66953800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr11:66947200-66954000	Strong transcription	Adipose Nuclei	Adipose
35	chr11:66947200-66954200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr11:66947200-66954400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
37	chr11:66947200-66954400	Strong transcription	Left Ventricle	heart
38	chr11:66947200-66954600	Strong transcription	Primary T helper cells PMA-I stimulated	--
39	chr11:66947200-66954800	Strong transcription	HUES64 Cell Line	embryonic stem cell
40	chr11:66947200-66957200	Strong transcription	HUES48 Cell Line	embryonic stem cell
41	chr11:66947200-66957600	Strong transcription	Primary neutrophils fromperipheralblood	blood
42	chr11:66947200-66958400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr11:66947200-66959400	Strong transcription	Placenta	Placenta
44	chr11:66947400-66952000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr11:66947400-66952600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr11:66947400-66953000	Strong transcription	Fetal Muscle Leg	muscle
47	chr11:66947400-66953400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
48	chr11:66947400-66953800	Strong transcription	K562	blood
49	chr11:66947400-66954200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
50	chr11:66947400-66954200	Strong transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links